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Stereochemical restraints revisited: how accurate are refinement targets and how much should protein structures be allowed to deviate from them?

Mariusz Jaskólski、Mirosław Gilski、Zbigniew Dauter 等 4 位作者2007-04-21Acta Crystallographica Section D Biological Crystallography

The Protein Data Bank and Cambridge Structural Database were analyzed with the aim of verifying whether the restraints that are most commonly used for protein structure refinement are still appropriate 15 years after their introduction. From an analysis of selected main-chain parameters in well ordered fragments of te…

Protein Structure and DynamicsMass Spectrometry Techniques and ApplicationsEnzyme Structure and Function

Simultaneous Self-Assembly, Orientation, and Patterning of Peptide−Amphiphile Nanofibers by Soft Lithography

Albert M. Hung、Samuel I. Stupp2007-04-21Nano Letters

Self-assembled nanofibers of peptide-amphiphile molecules have been of great interest because of their bioactivity both in vitro and in vivo. In this work, we demonstrate the simultaneous self-assembly, alignment, and patterning of these nanofibers over large areas by a novel technique termed sonication-assisted solut…

RNA Interference and Gene DeliveryChemical Synthesis and AnalysisSupramolecular Self-Assembly in Materials

Luminescent Sensing of Dicarboxylates in Water by a Bismacrocyclic Dinuclear Eu(III) Conjugate

Sally E. Plush、Thorfinnur Gunnlaugsson2007-04-21Organic Letters

The design, synthesis, and characterization of a novel dinuclear Eu(III) bismacrocyclic conjugate 1.Eu2 as a delayed luminescent lanthanide sensor for dicarboxylates is discussed. The sensor was shown to bind small dicarboxylic acids such as aspartic, malonic, succinic, or glutaric acid in pH 6.5 solutions. However, o…

Molecular Sensors and Ion DetectionMagnetism in coordination complexesLanthanide and Transition Metal Complexes

Synthesis and Spectroscopic Characterization of Copper(II)−Nitrito Complexes with Hydrotris(pyrazolyl)borate and Related Coligands

Nicolai Lehnert、U. Cornelissen、Frank Neese 等 7 位作者2007-04-21Inorganic Chemistry

This study focuses on the geometric (molecular) structures, spectroscopic properties, and electronic structures of copper(II)-nitrito complexes as a function of second coordination sphere effects using a set of closely related coligands. With anionic hydrotris(pyrazolyl)borate ligands, one nitrite is bound to copper(I…

Metal complexes synthesis and propertiesMagnetism in coordination complexesLanthanide and Transition Metal Complexes

Brønsted Acid-Catalyzed Benzylation of 1,3-Dicarbonyl Derivatives

Roberto Sanz、D. Miguel、Alberto Martínez‐Cuezva 等 5 位作者2007-04-21Organic Letters

The direct alkylation of 1,3-dicarbonyl compounds with benzylic alcohols is shown to be efficiently catalyzed by simple Brønsted acids such as triflic acid (TfOH) and p-toluenesulfonic acid (PTS) to give rise to monoalkylated dicarbonyl derivatives in high yields. In the absence of the nucleophile, substituted alkenes…

Polyoxometalates: Synthesis and ApplicationsChemical Synthesis and ReactionsOxidative Organic Chemistry Reactions

Low-Energy Electrodynamics of Heavy Quasiparticles in ZrZn2

Shin-ichi Kimura、Noriaki Kimura、Haruyoshi Aoki2007-04-21arXiv

The temperature dependence of the optical conductivity spectrum of an itinerant ferromagnetic material, ZrZn$_2$, was obtained and the dynamical effective mass and the scattering rate were derived. A renormalized Drude peak with a heavy effective mass developed at low temperatures. The effective mass rapidly increased…

Materials ScienceStrongly Correlated Electrons

Preparation and Application of Carbon-Nanofiber Based Microstructured Materials as Catalyst Supports

J.K. Chinthaginjala、K. Seshan、Leon Lefferts2007-04-21Industrial & Engineering Chemistry Research

In the application of heterogeneous catalysts in liquid phase reactions, the rate of reaction as well as selectivity is often negatively influenced by mass transfer limitations in the stagnant liquid in the pores of the catalyst support. Internal mass transfer limitations can be reduced by maximizing the porosity and…

Carbon Nanotubes in CompositesSupercapacitor Materials and FabricationCatalytic Processes in Materials Science

Protein crystallization by surface entropy reduction: optimization of the SER strategy

David R. Cooper、Tomasz Boczek、Katarzyna Grelewska‐Nowotko 等 7 位作者2007-04-21Acta Crystallographica Section D Biological Crystallography

A strategy of rationally engineering protein surfaces with the aim of obtaining mutants that are distinctly more susceptible to crystallization than the wild-type protein has previously been suggested. The strategy relies on replacing small clusters of two to three surface residues characterized by high conformational…

Protein Structure and DynamicsMass Spectrometry Techniques and ApplicationsEnzyme Structure and Function

Nanoscale Roughness on Metal Surfaces Can Increase Tip-Enhanced Raman Scattering by an Order of Magnitude

Weihua Zhang、Cui、Boon Siang Yeo 等 6 位作者2007-04-21Nano Letters

We studied the influence of nanosteps on signal intensity in gap-mode tip-enhanced Raman spectroscopy (TERS). A benzenethiol monolayer adsorbed on an Au substrate was investigated. The correlation between the TERS signal and the local topography on the substrate shows that a 2 nm high sharp step on the Au surface can…

Gold and Silver Nanoparticles Synthesis and ApplicationsPlasmonic and Surface Plasmon ResearchIon-surface interactions and analysis

Surface-Enhanced Raman Scattering of 4-Aminothiophenol Self-Assembled Monolayers in Sandwich Structure with Nanoparticle Shape Dependence: Off-Surface Plasmon Resonance Condition

Xiaoge Hu、Tie Wang、Liang Wang 等 4 位作者2007-04-21The Journal of Physical Chemistry C

A universal metal−molecule−metal sandwich architecture by the self-assembly of Ag nanoparticles (NPs) and Au NPs of various shapes interconnected with 4-aminothiophenol (4-ATP) molecules was presented. These Ag NPs/4-ATP/Au NPs sandwich structures were characterized by surface enhanced Raman scattering (SERS) using an…

Gold and Silver Nanoparticles Synthesis and ApplicationsAdvanced biosensing and bioanalysis techniquesMolecular Junctions and Nanostructures

Interaction of Amino Acids with Gold and Silver Clusters

A.H. Pakiari、Zahra Jamshidi2007-04-21The Journal of Physical Chemistry A

Binding of gold and silver clusters with amino acids (glycine and cysteine) was studied using density functional theory (DFT). Geometries of neutral, anionic, and cationic amino acids with Au3 and Ag3 clusters were optimized using the DFT-B3LYP approach. The mixed basis set used here was denoted by 6-31+G** (union or…

Quantum Dots Synthesis And PropertiesMolecular Junctions and NanostructuresNanocluster Synthesis and Applications

Sulfonated Ordered Mesoporous Carbon as a Stable and Highly Active Protonic Acid Catalyst

Xiqing Wang、Rui Liu、Mahesh Waje 等 7 位作者2007-04-21Chemistry of Materials

Covalent attachment of sulfonic acid-containing aryl radicals on the surface of ordered mesoporous carbon (CMK-5), leads to a solid acid catalyst with a high acid density. The material exhibits high surface area, uniform pore size distribution, high activity and good stability for acid-catalyzed reactions, such as est…

Catalytic Processes in Materials ScienceMesoporous Materials and CatalysisChemical Synthesis and Reactions

Polymer Nanocomposites with Prescribed Morphology: Going beyond Nanoparticle-Filled Polymers

Richard A. Vaia、John F. Maguire2007-04-21OpenAlex

Polymer nanocomposites (PNCs), i.e. nanoparticles (spheres, rods, and plates) dispersed in a polymer matrix, have garnered substantial academic and industrial interest since their inception, ca. 1990. With respect to the neat matrix, nanoparticle dispersion has been shown to enhance physical (e.g., barrier, erosion re…

Carbon Nanotubes in CompositesPolymer crystallization and propertiesPolymer Nanocomposites and Properties

Epitaxial Assembly Involved in Growth of BaTiO3 Nanocrystals under Hydrothermal Condition

Naoki Iwaji、Ryosuke Tanaka、Makoto Kuwabara2007-04-20Japanese Journal of Applied Physics

Epitaxial assembly involved in the formation of aggregates of single-crystalline barium titanate (BaTiO 3 ) nanoparticles under hydrothermal condition is reported. The aggregates of BaTiO 3 nanocrystals were synthesized by heating a mixture of barium hydroxide, Ba(OH) 2 , and titanium tetra-iso-propoxide, Ti(O i C 3 H…

Bone Tissue Engineering MaterialsFerroelectric and Piezoelectric MaterialsElectronic and Structural Properties of Oxides

Effective Conductivity of a Composite in a Primitive Tetragonal Lattice of Highly Conducting Spheres in Resistive Thermal Contact With the Isolating Matrix

Cristina Filip、Bertrand Garnier、F. Danès2007-04-20ASME Journal of Heat and Mass Transfer

A state-of-the-art study and a physical and numerical 3D finite element study of anisotropic conduction through composites filled with isometric inclusions of different conductivity were performed by modeling the longitudinal conduction across a tetragonal lattice of spheres in imperfect contact with the surrounding m…

Graphene research and applicationsThermal properties of materialsComposite Material Mechanics

Synthesis, X-ray Structure, and l-Lactide/ε-Caprolactone Polymerization Behavior of Monomeric Aryloxytitanatrane

Sang-Deok Mun2007-04-20Bulletin of the Korean Chemical Society

Titanatrane, Mononuclear, Ring opening polymerization, Polylactide, PolycaprolactoneThe chemistry of atrane coordinated by the central nitro-gen atom as well as all three arms of deprotonated triethanol-amine ligand, imino-2,2',2''-triethanolate, has been inten-sively studied over the past few decades and its examples…

Organometallic Complex Synthesis and Catalysisbiodegradable polymer synthesis and propertiesCarbon dioxide utilization in catalysis

Intraparticle diffusion of 1‐phenyl‐1, 2‐ethanediol in layered double hydroxides

Xiaolei Liu、Min Wei、Feng Li 等 4 位作者2007-04-20AIChE Journal

Abstract The enantioselective adsorption of racemic 1‐phenyl‐1,2‐ethanediol (PED) by carboxymethyl‐β‐cyclodextrin‐intercalated Zn–Al‐ layered double hydroxides (CMCD‐LDHs) has been studied. The adsorption isotherms of enantioselective as well as nonenantioselective adsorption of PED by CMCD‐LDHs have been investigated…

Mesoporous Materials and CatalysisLayered Double Hydroxides Synthesis and ApplicationsCovalent Organic Framework Applications

Quantitative Control over Electrodeposition of Silica Films onto Single-Walled Carbon Nanotube Surfaces

Mandakini Kanungo、Hugh S. Isaacs、Stanislaus S. Wong2007-04-20The Journal of Physical Chemistry C

Control over the thickness of a silica coating on single-walled carbon nanotubes (SWNTs) is highly desirable for applications in optics and in biomedicine. Moreover, a silica coating on SWNTs would also aid in avoiding tube−tube contact and bundle formation as well as tube oxidation, a scenario conducive to the use of…

Carbon Nanotubes in CompositesElectrochemical Analysis and ApplicationsAnalytical Chemistry and Sensors

Studies Directed to Understanding the Structure of Chitosan−Metal Complexes: Investigations of Mono- and Disaccharide Models with Platinum(II) Group Metals

Sine A. Johannesen、Bent O. Petersen、Jens Ø. Duus 等 4 位作者2007-04-20Inorganic Chemistry

X-ray and NMR experiments were performed with simple chitosan models based on glucosamine monosaccharides and disaccharides to understand the binding properties and structures of the complexes formed between this polysaccharide and platinum(II) metals. Subjection of the glucosamine derivatives with [PdCl2(PhCN)2] prov…

Nanocomposite Films for Food PackagingSurfactants and Colloidal SystemsCarbohydrate Chemistry and Synthesis

Preparation of a Functionally Flexible, Three-Dimensional, Biomimetic Poly(L-Lactic Acid) Scaffold with Improved Cell Adhesion

José F. Álvarez-Barreto、Mark Shreve、Paul L. DeAngelis 等 4 位作者2007-04-20Tissue Engineering

Poly(L-lactic acid) (PLLA) is widely used in tissue-engineering applications because of its degradation characteristics and mechanical properties, but it possesses an inert nature, affecting cell-matrix interactions. It is desirable to modify the surface of PLLA to create biomimetic scaffolds that will enhance tissue…

Bone Tissue Engineering Materialsbiodegradable polymer synthesis and propertiesSilk-based biomaterials and applications