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REFMAC5 dictionary: organization of prior chemical knowledge and guidelines for its use

Alexei A. Vagin、Roberto A. Steiner、Andrey A. Lebedev 等 7 位作者2004-11-26OpenAlex

One of the most important aspects of macromolecular structure refinement is the use of prior chemical knowledge. Bond lengths, bond angles and other chemical properties are used in restrained refinement as subsidiary conditions. This contribution describes the organization and some aspects of the use of the flexible a…

Computational Drug Discovery MethodsEnzyme Structure and FunctionMachine Learning in Materials Science

Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions

Eugene Krissinel、K. Henrick2004-11-26OpenAlex

The present paper describes the SSM algorithm of protein structure comparison in three dimensions, which includes an original procedure of matching graphs built on the protein's secondary-structure elements, followed by an iterative three-dimensional alignment of protein backbone Calpha atoms. The SSM results are comp…

Protein Structure and DynamicsEnzyme Structure and FunctionMachine Learning in Bioinformatics

Coot: model-building tools for molecular graphics

Paul Emsley、Kevin Cowtan2004-11-26OpenAlex

CCP4mg is a project that aims to provide a general-purpose tool for structural biologists, providing tools for X-ray structure solution, structure comparison and analysis, and publication-quality graphics. The map-fitting tools are available as a stand-alone package, distributed as 'Coot'.

Protein Structure and DynamicsMicrobial Metabolic Engineering and BioproductionEnzyme Structure and Function

A phenomenological model for hysteresis in polycrystalline shape memory alloys

Martin Kružík、Félix Otto2004-11-25ZAMM ‐ Journal of Applied Mathematics and Mechanics / Zeitschrift für Angewandte Mathematik und Mechanik

Abstract We propose a phenomenological model describing stress and temperature induced transformations in polycrystalline shape memory alloys. Polycrystallinity is mimicked on the level of a finite element discretization: Each element is treated as a single grain of a randomly chosen orientation. This heterogeneity de…

Microstructure and Mechanical Properties of SteelsShape Memory Alloy TransformationsSolidification and crystal growth phenomena

Existence of Colloidal Primitive Building Units Exhibiting Memory Effects in Zeolite Growth Compositions

V. Radha Rani、Ramsharan Singh、Pramatha Payra 等 4 位作者2004-11-25The Journal of Physical Chemistry B

This study focuses on the clear, stable mother liquors obtained after completion of crystallization of nanocrystalline sodalite, zeolite A, and zeolite Y. Characterization of the freeze-dried mother liquors by high-resolution transmission electron microscopy showed regions of crystallinity for both zeolites A and Y, a…

Zeolite Catalysis and SynthesisMesoporous Materials and CatalysisPolyoxometalates: Synthesis and Applications

Polymerization of Two Unsymmetrical Isomeric Monomers Based on Thieno[3,4-b]thiophene Containing Cyanovinylene Spacers

Venkataramanan Seshadri、Gregory A. Sotzing2004-11-25Chemistry of Materials

Two cyanovinylene-containing isomeric monomers were prepared by the Knoevenagel condensation of 4- and 6-formylthieno[3,4- b ]thiophene with thiophene-2-acetonitrile, and these monomers were electrochemically polymerized to yield two low-band-gap (1.2 eV) conjugated polymers. The onsets for oxidation of the conjugated…

Organic Electronics and PhotovoltaicsConducting polymers and applicationsMolecular Junctions and Nanostructures

Metallic Ni nanoparticles confined in hexagonally ordered mesoporous silica material

Katsutoshi Yamamoto、Yoji Sunagawa、Hideyuki Takahashi 等 4 位作者2004-11-25Chemical Communications

Single nanometer-sized metallic Ni particles have been successfully deposited inside a hexagonally ordered mesoporous silica material by using a liquid-phase reductive deposition method.

Catalytic Processes in Materials SciencePhotonic Crystals and ApplicationsMesoporous Materials and Catalysis

Structure and catalytic activity of a manganese( iii ) tetraphenylporpholactone

Aníl Çetin、Christopher J. Ziegler2004-11-25Dalton Transactions

A manganese(III) complex of tetraphenylporpholactone, Mn(TPPL)Cl, was synthesized and characterized, including by single-crystal X-ray diffraction; the catalytic activity of this complex for olefin epoxidation reactions is compared with that of manganese(III) tetraphenylporphyrin chloride, Mn(TPP)Cl.

Magnetism in coordination complexesPorphyrin and Phthalocyanine ChemistryMetal-Catalyzed Oxygenation Mechanisms

Electrochemical deposition and characterization of CoFe2O4 thin films

Shrikrishna D. Sartale、C.D. Lokhande、V. Ganesan2004-11-25physica status solidi (a)

Abstract An electrochemical deposition process, which is a combination of electrodeposition of CoFe 2 alloy from an ethylene glycol bath followed by its anodization at ambient temperature, is used to deposit CoFe 2 O 4 thin films on different conducting substrates. Various deposition conditions are studied and optimiz…

Magnetic properties of thin filmsMagnetic Properties and Synthesis of FerritesIron oxide chemistry and applications

Green Earth Pigment from the Kadaň Region, Czech Republic: Use of Rare Fe-rich Smectite

David Hradil、Tomáš Matys Grygar、Michaela Hrušková 等 7 位作者2004-11-25Clays and Clay Minerals

Abstract A collection of green earths belonging to traditional artists’ pigments was examined in terms of mineralogy and provenance. The studied specimens included both mineralogical reference compounds and selected commercially available artists’ pigments, and contained green micas (glauconite or celadonite), chlorit…

Clay minerals and soil interactionsIron oxide chemistry and applicationsMineralogy and Gemology Studies

Structure and Dynamics of Polymer-Grafted Clay Suspensions

Deepak Shah、George Fytas、Dimitris Vlassopoulos 等 6 位作者2004-11-25Langmuir

The structure and dynamics of polymer-grafted two-dimensional silicate layers in solution were investigated. The geometry of the individual silicate layers was examined by looking at both polarized and depolarized light scattering from dilute solutions, while higher-concentration systems were used to study the interac…

Material Dynamics and PropertiesPolymer Nanocomposites and PropertiesPolymer Surface Interaction Studies

Dickite and Other Kaolin Polymorphs from an Al-rich Clay Deposit Formed in Volcanic Tuff, Southeastern Korea

Chang Oh Choo、Soo Jin Kim2004-11-25Clays and Clay Minerals

Abstract Kaolins from an Al-rich clay deposit formed in volcanic tuff, southeastern Korea contain predominant dickite and quartz with accessory diaspore, pyrophyllite, alunite, illite, sulfides and calcite. Intergrowth of blocky crystals with thin ones within stacks suggests that blocky crystals gradually replaced thi…

Geological and Geochemical AnalysisSoil and Unsaturated FlowClay minerals and soil interactions

Water-Coordinated Neutral Silane Complex: A Frozen Intermediate of Hydrolysis of Alkoxysilanes

Junji Kobayashi、Keiko Kawaguchi、Takayuki Kawashima2004-11-25Journal of the American Chemical Society

1-Aquo- and 1-ethyloxonio-5-carbasilatranes 2 and 3 were synthesized. X-ray crystallographic analysis revealed that 2 has a nearly ideal trigonal bipyramidal structure, in which the water molecule is located at the apical position. This water molecule is exchangeable with the other Lewis bases, such as H218O and HMPA.…

Mesoporous Materials and CatalysisPorphyrin and Phthalocyanine ChemistrySilicone and Siloxane Chemistry

Crystal and magnetic structures of the double perovskite La2CoRuO6

Jan‐Willem G. Bos、J. Paul Attfield2004-11-25Journal of Materials Chemistry

The crystal and magnetic structures of the double perovskite La2CoRuO6 have been investigated using neutron powder diffraction. La2CoRuO6 has a monoclinic P21/n superstructure (a = 5.5724(3) Å, b = 5.6288(3) Å, c = 7.8843(4) Å and β = 89.99(2)°) with a rocksalt ordered arrangement of Co and Ru over the perovskite B si…

Physics of Superconductivity and MagnetismMagnetic and transport properties of perovskites and related materialsAdvanced Condensed Matter Physics

Application of phosphate rock, with or without Aspergillus awamori inoculation, to meet phosphorus demands of rice–wheat systems in the Indo–Gangetic plains of India

B. S. Dwivedi、Virendra Singh、V. P. Dwivedi2004-11-25Australian Journal of Experimental Agriculture

A 3-year field experiment beginning in 1995–96 was undertaken on a Gangetic alluvial soil (Typic Ustochrept) at Modipuram, India, to examine how phosphorus (P) demands of rice–wheat cropping systems might be met with heavy initial dressings of phosphate rock. Treatments were: (i) 1 rice–wheat cycle where P was applied…

Geochemistry and Elemental AnalysisClay minerals and soil interactionsPhosphorus and nutrient management

7‐Azaindolyl‐ and 2,2′‐Dipyridylamino‐Functionalized Molecular Stars with Sixfold Symmetry: Self‐Assembly, Luminescence, and Coordination Compounds

Wen‐Li Jia、Rui‐Yao Wang、Datong Song 等 6 位作者2004-11-25Chemistry - A European Journal

Two novel star molecules functionalized with 7-azaindolyl and 2,2'-dipyridylamino groups have been synthesized. Both molecules possess a sixfold rotation symmetry. Molecule L1 is based on the hexaphenylbenzene core with the formula of hexa[p-(7-azaindolyl)phenyl]benzene, while molecule L2 is based on the hexakis(biphe…

Molecular Sensors and Ion DetectionSupramolecular Chemistry and ComplexesLuminescence and Fluorescent Materials

Cellulase degradation of shrimp chitosan for the preparation of a water-soluble hydrolysate with immunoactivity

Guan-James Wu、Guo‐Jane Tsai2004-11-25Fisheries Science

Samples of colloidal chitin and chitosans with deacetylation degrees (DD) of 50, 65, 75 and 95% (DD50, DD65, DD75 and DD95, respectively) were prepared from shrimp chitin. The hydrolytic activity of cellulase on these samples increased with the increasing DD of chitosan, with DD95 being the most easily hydrolyzed. Col…

Nanocomposite Films for Food PackagingAdvanced Drug Delivery SystemsStudies on Chitinases and Chitosanases

Highly selective epoxidation of styrene using a transition metal–aluminium( iii ) complex containing the [MeAl(2-py) 3 ] − anion (2-py = 2-pyridyl)

C.S. Alvarez、Felipe Garcı́a、Simon M. Humphrey 等 11 位作者2004-11-25Chemical Communications

The reactions of [MeAl(2-py)3Li.thf] (1) with FeCl2 or Cp2Mn in toluene-thf give simple access to the Group 13-transition metal heterometallic complexes [{MeAl(2-py)3}2M][M = Fe (2), Mn (3)]; complex has been shown to be a highly selective styrene epoxidation catalyst in air.

Organometallic Complex Synthesis and CatalysisPolyoxometalates: Synthesis and ApplicationsCarbon dioxide utilization in catalysis

Fe-Rich Clays in a Weathering Profile Developed from Serpentinite

Jacinthe Caillaud、D. Proust、D. Righi 等 4 位作者2004-11-25Clays and Clay Minerals

Abstract Bulk mineralogical and chemical properties of a weathering profile derived from serpentinite were studied using classical pedological methods (Munsell soil colors, particle-size distribution, density, cation exchange capacity, exchangeable bases, among others) and inductively coupled plasma-atomic emission sp…

Soil and Unsaturated FlowClay minerals and soil interactionsIron oxide chemistry and applications

Solubilities of 1,3-Benzenedicarboxylic Acid in Water + Acetic Acid Solutions

Bingwen Long、Li‐Sheng Wang、Junsheng Wu2004-11-25Journal of Chemical & Engineering Data

The solubilities of 1,3-benzenedicarboxylic acid (isophthalic acid) in water, acetic acid, and acetic acid + water solutions with mass fractions of acetic acid on a solute-free basis of 0.2056, 0.4083, and 0.6082, respectively, were measured. The concentration of the solution was determined by a gravimetrical method.…

Surfactants and Colloidal SystemsCrystallization and Solubility StudiesChemical and Physical Properties in Aqueous Solutions