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Differential evolution for protein crystallographic optimizations

Duncan E. McRee2004-11-26Acta Crystallographica Section D Biological Crystallography

Genetic algorithms are powerful optimizers that have been underutilized in protein crystallography, given that many crystallographic problems have characteristics that would benefit from these algorithms: non-linearity, interdependent parameters and a complex function landscape. These functions have been implemented f…

Protein Structure and DynamicsAdvanced Proteomics Techniques and ApplicationsEnzyme Structure and Function

Liking likelihood

Airlie J. McCoy2004-11-26Acta Crystallographica Section D Biological Crystallography

Maximum-likelihood methods have now been applied to most areas of macromolecular crystallography, including data reduction, molecular replacement, experimental phasing and refinement. However, students of macromolecular crystallography are predominantly taught only traditional crystallographic methods and therefore ha…

Protein Structure and DynamicsEnzyme Structure and FunctionAdvanced X-ray Imaging Techniques

Formation of Hexagonal Mesoporous Silica in Submicrometer Channels

Guido Kickelbick2004-11-26Small

Pores for thought: The channels of alumina membranes were used as templates for mesoporous silica. The interface between the precursor of the mesoporous material and the alumina wall plays a major role in the alignment of the mesopores. Novel membrane materials are obtained if hexagonal pores are aligned parallel to t…

Zeolite Catalysis and SynthesisMesoporous Materials and CatalysisAerogels and thermal insulation

Structure Formation in Isotactic Poly(methacrylic acid)

E. Bosch、Quintin Keil、Genovéva Filipcsei 等 5 位作者2004-11-26Macromolecules

ADVERTISEMENT RETURN TO ISSUEPREVCommunication to the...Communication to the EditorNEXTStructure Formation in Isotactic Poly(methacrylic acid)Edith van den Bosch, Quintin Keil, Genovéva Filipcsei, Hugo Berghmans, and Harry ReynaersView Author Information Polymer Research Devision, Department of Chemistry, Catholic Uni…

Polymer crystallization and propertiesAdvanced Polymer Synthesis and Characterizationbiodegradable polymer synthesis and properties

Introduction to macromolecular refinement

Dale E. Tronrud2004-11-26Acta Crystallographica Section D Biological Crystallography

The process of refinement is such a large problem in function minimization that even the computers of today cannot perform the calculations to properly fit X-ray diffraction data. Each of the refinement packages currently under development reduces the difficulty of this problem by utilizing a unique combination of tar…

Protein Structure and DynamicsEnzyme Structure and FunctionAdvanced X-ray Imaging Techniques

ZnO Well-Faceted Fibers with Periodic Junctions

Lisheng Huang、Stuart I. Wright、Shaoguang Yang 等 6 位作者2004-11-26The Journal of Physical Chemistry B

ZnO well-faceted microfibers with periodic junctions were prepared by an evaporation and deposition process. The junctions with spacings of 5−30 μm presented concavo−concave morphologies, and the spacings could be changed with the growth conditions. The anisotropic growth mechanism was investigated by X-ray diffractio…

ZnO doping and propertiesGaN-based semiconductor devices and materialsNanomaterials and Printing Technologies

Zeolite covered polymer derived ceramic foams: novel hierarchical pore systems for sorption and catalysis

Franziska Scheffler、A. Zampieri、Wilhelm Schwieger 等 6 位作者2004-11-26Advances in Applied Ceramics Structural Functional and Bioceramics

Open cell polymer derived ceramic foams were prepared by a self-foaming process of a filler loaded poly(silsesquioxane) and subsequent pyrolysis at 1000°C in nitrogen atmosphere. A 1 : 1 mixture by weight of elemental Si and SiC was introduced as particulate filler. Foam samples without and with addition of a small am…

Advanced ceramic materials synthesisPolymer Nanocomposites and PropertiesSilicone and Siloxane Chemistry

Modelling bound ligands in protein crystal structures

Peter H. Zwart、Gerrit G. Langer、Victor S. Lamzin2004-11-26Acta Crystallographica Section D Biological Crystallography

Methods for automated identification and building of protein-bound ligands in electron-density maps are described. An error model of the geometrical features of the molecular structure of a ligand based on a lattice distribution of positional parameters is obtained via simulation and is used for the construction of an…

Protein Structure and DynamicsComputational Drug Discovery MethodsEnzyme Structure and Function

LZSA glass ceramic foams prepared by replication process

Eliandra de Sousa Trichês、Cristian Berto da Silveira、Tobias Fey 等 6 位作者2004-11-26Advances in Applied Ceramics Structural Functional and Bioceramics

In this study the replication process was applied to produce porous glass ceramic foams. Polyurethane (PU) sponges were impregnated by immersion in aqueous slurry of a parent glass (mean particle size around 3 μm) from the system Li2O–ZrO2–SiO2–Al2O3 and submitted to heat treatment. From TGA and IR analyses, two main…

Advanced ceramic materials synthesisAdvancements in Solid Oxide Fuel CellsFlame retardant materials and properties

Lactone End-Capped Poly(ethylene oxide) as a New Building Block for Biomaterials

Jutta Rieger、Katrien V. Bernaerts、Filip Du Prez 等 5 位作者2004-11-26Macromolecules

This paper reports on the synthesis of a novel poly(ethylene oxide) (PEO) macromonomer, which can be copolymerized with ε-caprolactone (ε-CL) by ring-opening polymerization (ROP). PEO chains end-capped by an ε-caprolactone unit (γPEO·CL) have been synthesized by living anionic ring-opening polymerization of ethylene o…

Advanced Polymer Synthesis and Characterizationbiodegradable polymer synthesis and propertiesSynthetic Organic Chemistry Methods

Nature inspired novel processing routes for ceramic foams

Santanu Dhara、Mamata Pradhan、Dipankar Ghosh 等 4 位作者2004-11-26Advances in Applied Ceramics Structural Functional and Bioceramics

A closer look at some natural materials from animal and plant sources and the phenomenon driving their use in day to day applications resulted in investigation of their potential in processing of ceramic foams. Ceramic foams were made using aqueous ceramic slurries based on chicken egg white, soap nut fruit extract an…

Bone Tissue Engineering MaterialsAdvanced Photocatalysis TechniquesPickering emulsions and particle stabilization

Synthesis and Cytotoxicity of Salicylate-Based Poly(anhydride esters)

Robert C. Schmeltzer、Kristine E. Schmalenberg、Kathryn E. Uhrich2004-11-26Biomacromolecules

This paper describes the synthesis and cytotoxicity of poly(anhydride esters) that are composed of several salicylate derivatives, including halogenated salicylates, aminosalicylates, salicylsalicylic acid, and thiolsalicylic acid. The incorporation of these nonsteroidal antiinflammatory drugs (NSAIDs) into a biodegra…

Advanced Polymer Synthesis and Characterizationbiodegradable polymer synthesis and propertiesChemical Synthesis and Reactions

Mechanical Properties of Cross-Linked Hyaluronic Acid/Poly-(l-lysine) Multilayer Films

Dominique Collin、Philippe Lavall�e、Juan Méndez Garza 等 6 位作者2004-11-26Macromolecules

ADVERTISEMENT RETURN TO ISSUEPREVNoteNEXTMechanical Properties of Cross-Linked Hyaluronic Acid/Poly-(l-lysine) Multilayer FilmsDominique Collin, Philippe Lavalle, Juan Méndez Garza, Jean-Claude Voegel, Pierre Schaaf, and Philippe MartinotyView Author Information Laboratoire de Dynamique des Fluides Complexes (CNRS/ULP…

Electrospun Nanofibers in Biomedical ApplicationsPolymer Surface Interaction StudiesConnective tissue disorders research

Gold Redox Catalysis for Selective Oxidation of Methane to Methanol

Dirk De Vos、Bert F. Sels2004-11-26Angewandte Chemie International Edition

As good as gold: The activation and selective oxygenation of inert CH bonds, as in methane, is a demanding problem. It is now shown that the combination of gold as a catalyst and H2SeO4 as the oxidant results in a 94 % selectivity for CH3OSO3H at 28 % CH4 conversion (see scheme). These results mean that gold now clai…

Catalytic Processes in Materials ScienceCatalysis and Hydrodesulfurization StudiesCatalysis and Oxidation Reactions

Structure of shikimate kinase fromMycobacterium tuberculosisreveals the binding of shikimic acid

José Henrique Pereira、Jaim Simões de Oliveira、Fernanda Canduri 等 8 位作者2004-11-26Acta Crystallographica Section D Biological Crystallography

Tuberculosis made a resurgence in the mid-1980s and now kills approximately 3 million people a year. The re-emergence of tuberculosis as a public health threat, the high susceptibility of HIV-infected persons and the proliferation of multi-drug-resistant strains have created a need to develop new drugs. Shikimate kina…

Protein Structure and DynamicsEnzyme Structure and FunctionBiochemical and Molecular Research

Model Treatment of Tensile Deformation of Semicrystalline Polymers: Static Elastic Moduli and Creep Parameters Derived for a Sample of Polyethylene

Kunlun Hong、A. Rastogi、G. Strobl2004-11-26Macromolecules

A model constructed to treat tensile deformation of semicrystalline polymers introduced in a first paper is again applied to measurements on poly(ethylene- co -12% vinyl acetate) and is now used for an extraction of true elastic moduli and a discussion of the creep behavior. Elastic moduli vary in a characteristic man…

Polymer crystallization and propertiesPolymer Nanocomposites and PropertiesNatural Fiber Reinforced Composites

Using prime-and-switch phasing to reduce model bias in molecular replacement

Thomas C. Terwilliger2004-11-26Acta Crystallographica Section D Biological Crystallography

Atomic models are commonly used to calculate phases in macromolecular crystallography. When combined with measured amplitudes, model-based phases yield electron-density maps with features of the correct structure but with a significant bias towards features of the model. The present contribution shows applications of…

Protein Structure and DynamicsCrystallography and molecular interactionsEnzyme Structure and Function

Strong ceramic foams from polyurethane templates

Jeroen Luyten、I. Thijs、W. Vandermeulen 等 6 位作者2004-11-26Advances in Applied Ceramics Structural Functional and Bioceramics

The most conventional manufacturing route for ceramic foams with open cells consists of coating reticulated polyurethane foams. The resulting material has well defined cell size, but suffers from low mechanical strength owing to the presence of hollow struts. As a result, the performance and utilisation of ceramic foa…

Asphalt Pavement Performance EvaluationInnovative concrete reinforcement materialsPolymer composites and self-healing

Time Gating Improves Sensitivity in Energy Transfer Assays with Terbium Chelate/Dark Quencher Oligonucleotide Probes

Mary Katherine Johansson、Ronald M. Cook、Jide Xu 等 4 位作者2004-11-26Journal of the American Chemical Society

Lanthanides are attractive as biolabels because their long luminescence decay rates allow time-gated detection, which separates background scattering and fluorescence from the lanthanide emission. A stable and highly luminescent terbium complex based on a tetraisophthalamide (TIAM) chelate is paired with a polyaromati…

Advanced biosensing and bioanalysis techniquesLanthanide and Transition Metal ComplexesNanocluster Synthesis and Applications

Interactive electron-density map interpretation: fromINTERtoO

T. Alwyn Jones2004-11-26Acta Crystallographica Section D Biological Crystallography

A short review of the author's computer-graphics developments since 1976 is presented. Some of the major developments in these programs are reviewed and a description is provided of some of the more recent tools that can be used for electron-density map interpretation. These tools include a secondary-structure templat…

Advanced Chemical Physics StudiesAdvanced Electron Microscopy Techniques and ApplicationsElectron and X-Ray Spectroscopy Techniques