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Additional file 9: of Plant pectin acetylesterase structure and function: new insights from bioinformatic analysis

Florian Philippe、Jérôme Pelloux、Catherine Rayon2017-01-01Figshare

Structural evaluation of the 3D models of AtPAE4, AtPAE8 and AtPAE10 using Ramachandran plot analysis. Each model was compared to the template 4UYU (in dark green). The Ramachandran plot was visualized using Pymol [77]. The 3D models of AtPAE4, AtPAE8 and AtPAE10 are in red, blue and olive, respectively. The square an…

Postharvest Quality and Shelf Life ManagementPolysaccharides and Plant Cell WallsAdvanced Cellulose Research Studies

Additional file 1: Figure S1. of (La0.97RE0.01Yb0.02)2O2S Nanophosphors Converted from Layered Hydroxyl Sulfate and Investigation of Upconversion Photoluminescence (RE=Ho, Er)

Ji-Guang Li、Xuejiao Wang、Weigang Liu 等 6 位作者2017-01-01Figshare

Configuration of laser pumping and UC measurement in JASCO FP-6500 sample chamber. Figure S2. UC luminescence comparison of (La,RE,Yb)2O2S and (La,RE)2O2S under the excitation of 978-nm laser. Table S1. CIE chromaticity coordinates of the (La0.97Ho0.01Yb0.02)2O2S UC phosphor under different excitation power. Figure S3…

Lanthanide and Transition Metal ComplexesSolid State Laser TechnologiesLuminescence Properties of Advanced Materials

MOESM1 of Synthesis of europium-doped VSOP, customized enhancer solution and improved microscopy fluorescence methodology for unambiguous histological detection

Angela Schellenberger、Ralf Hauptmann、Jason M. Millward 等 9 位作者2017-01-01Figshare

Additional file 1: Figure S1. Schematic illustration of the micellar structure formed by free Eu3+ and HEE. The europium ion is coordinated by three β-NTA molecules via the two oxygen atoms (red) of the two carbonyl groups and by two TOPO molecules (green) via the oxygen atoms. The complex is surrounded by Triton X-1…

Radiopharmaceutical Chemistry and ApplicationsMolecular Sensors and Ion DetectionLanthanide and Transition Metal Complexes

Additional file 1 of Improved protein structure reconstruction using secondary structures, contacts at higher distance thresholds, and non-contacts

Badri Adhikari、Jianlin Cheng2017-01-01Figshare

Table S1. Best of 20 models reconstructed for CASP 8, 9, 10 and 11 target domains (a) without secondary structure information and local contacts with sequence separation less than six removed (column ‘without SS (sep = 6)’), (b) without secondary structure information and no sequence separation threshold (column ‘with…

Enzyme Structure and FunctionAdvanced Electron Microscopy Techniques and ApplicationsProtein Structure and Dynamics

MOESM1 of G.A.M.E.: GPU-accelerated mixture elucidator

Alioune Schurz、Bo‐Han Su、Yi-Shu Tu 等 6 位作者2017-01-01Figshare

Additional file 1. Contains the supplementary information of the manuscript. This includes (1) overview of GPU programming framework with CUDA; (2) parameter limitations assessment imposed by hardware; (3) an introduction for the prediction procedure in NP-StructurePredictor; (4) an introduction of dynamic algorithm f…

Machine Learning in Materials ScienceMachine Learning and Data ClassificationFace and Expression Recognition

Additional file 15: of Metabolic adaptation of two in silico mutants of Mycobacterium tuberculosis during infection

Víctor A. López-Agudelo、Andres Baena、Howard Ramirez-Malule 等 6 位作者2017-01-01Figshare

Model scheme of fluxes during the metabolic adaptation of the icl-mutant in a caseous granuloma (F3/F4), during the consumption of asparagine. Blue boxes represent up taken and produced metabolites. (PDF 58 kb)

Cancer and biochemical researchEnzyme Structure and FunctionTuberculosis Research and Epidemiology

Additional file 4: Figure S3. of Isolation of ripening-related genes from ethylene/1-MCP treated papaya through RNA-seq

Yan Shen、Bing Lu、Li Feng 等 7 位作者2017-01-01Figshare

KEGG graph of porphyrin and chlorophyll metabolism pathway (CG-vs-ETH). 1.16.3.1 indicates ferretin 1 (evm.TU.supercontig_5.220); 2.5.1.61 indicates hydroxymethylbilane synthase (evm.TU.supercontig_43.43); 1.3.3.4 indicates protoporphyrinogen oxidase (evm.TU.supercontig_130.4); 6.6.1.1 indicates magnesium-chelatase su…

Enzyme Structure and FunctionPlant Gene Expression AnalysisPhotosynthetic Processes and Mechanisms

Additional file 1: Figure S1A–E. of Tuning Tribological Performance of Layered Zirconium Phosphate Nanoplatelets in Oil by Surface and Interlayer Modifications

Xiao Han、Huaisong Yong、Dazhi Sun2017-01-01Figshare

Surface roughness of five metal balls examined by a 3D profiler. The average surface roughness is 155.0 ± 14.8 nm. Figure S2. FTIR of various surface modified-ZrP samples. The strong characteristic bands associated with the asymmetric and symmetric stretching of the C−H, between 2900 and 3000cm−1, and bending at ca. 1…

Lubricants and Their AdditivesPolymer Nanocomposites and PropertiesTribology and Wear Analysis

Additional file 2: Figure S2. of Effect of Gold Nanoparticle Distribution in TiO2 on the Optical and Electrical Characteristics of Dye-Sensitized Solar Cells

Shuichi Mayumi、Yutaka Ikeguchi、Daisuke Nakane 等 6 位作者2017-01-01Figshare

(a) Jsc and (b) η of the DSSCs with varying the density of GNPs. GNP layers were formed at the interface between the conductive glass and TiO2 layers of 1.4 μm (3rd and 4th lots) and 1.8 μm (5th lot) thicknesses, respectively. (PDF 278 kb)

Pigment Synthesis and PropertiesTiO2 Photocatalysis and Solar CellsChemical and Physical Properties of Materials

Additional file 1: Figure S1. of Highly Enhanced H2 Sensing Performance of Few-Layer MoS2/SiO2/Si Heterojunctions by Surface Decoration of Pd Nanoparticles

Lanzhong Hao、Yunjie Liu、Yongjun Du 等 7 位作者2017-01-01Figshare

AFM images of the Pd-decorated MoS2 films with the Pd thickness of (a) d Pd = 1 nm, (b) d Pd = 3 nm, (c) d Pd = 5 nm, (d) d Pd = 10 nm, (e) d Pd = 15 nm and (f) d Pd = 30 nm. Figure S2. UV spectrum of the few-layer MoS2 film. Figure S3. Sensing curves of (a) the few-layer MoS2/SiO2/Si heterojunction and (b) 5-nm Pd/Si…

Chemical and Physical Properties of Materials2D Materials and ApplicationsGas Sensing Nanomaterials and Sensors

Additional file 4: of A modified GC-specific MAKER gene annotation method reveals improved and novel gene predictions of high and low GC content in Oryza sativa

Megan J. Bowman、Jane A. Pulman、Tiffany Liu 等 4 位作者2017-01-01Figshare

Distribution of GC content, MAKER six HMMs gene predictions and novel genes predicted by the high and low GC HMMs in the Oryza sativa genome. A) Genomic GC content in 300 Mb bins. Warmer colors indicate higher than average GC content while cooler colors indicate lower than average GC content. B) Heatmap visualization…

RNA and protein synthesis mechanismsEnzyme Structure and FunctionPlant Gene Expression Analysis

Additional file 1: Table S1. of Mechanistic insight into the impact of nanomaterials on asthma and allergic airway disease

Kirsty Meldrum、Chang Guo、Emma L. Marczylo 等 6 位作者2017-01-01Figshare

Effects of nanomaterials in non-allergic in vivo models of experimental pulmonary exposure. Table S2. Allergen independent effects of nanomaterials in in vivo models of experimental pulmonary exposure documented as part of larger allergy driven models of asthma and allergic airway disease. Table S3. In vitro models an…

Occupational exposure and asthmaNanoparticles: synthesis and applicationsInhalation and Respiratory Drug Delivery

Additional file 1: of Lineage- and developmental stage-specific mechanomodulation of induced pluripotent stem cell differentiation

Maricela Maldonado、Rebeccah J. Luu、Gerardo Ico 等 7 位作者2017-01-01Figshare

Chemical characterization of electrospun scaffolds. Fluorescence images of nanofibrous scaffolds that are collagen type I-conjugated or unconjugated and stained with an anticollagen type I antibody. (PDF 186 kb)

Tissue Engineering and Regenerative MedicineSilk-based biomaterials and applicationsElectrospun Nanofibers in Biomedical Applications