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Examination of shape complementarity in docking ofUnbound proteins

Raquel Norel、Donald Petrey、Haim J. Wolfson 等 4 位作者1999-08-15Proteins Structure Function and Bioinformatics

Here we carry out an examination of shape complementarity as a criterion in protein-protein docking and binding. Specifically, we examine the quality of shape complementarity as a critical determinant not only in the docking of 26 protein-protein "bound" complexed cases, but in particular, of 19 "unbound" protein-prot…

Protein Structure and DynamicsUbiquitin and proteasome pathwaysEnzyme Structure and Function

Interpretation of the119SnMössbauer isomer shifts in complex tin chalcogenides

Pierre‐Emmanuel Lippens1999-08-15Physical review. B, Condensed matter

The main observed trends in the variations of the ${}^{119}\mathrm{Sn}$ M\"ossbauer isomer shift \ensuremath{\delta} for tin chalcogenides are interpreted in terms of the valence electronic populations, and are related to changes in the Sn local environment. First, the values of the valence electron charge density at…

Crystal Structures and PropertiesIron-based superconductors researchInorganic Chemistry and Materials

Two-order-parameter description of liquids. I. A general model of glass transition covering its strong to fragile limit

Hajime Tanaka1999-08-15The Journal of Chemical Physics

Here we propose a simple physical model that may universally describe glass-transition phenomena from the strong to the fragile limit. Our model is based on the idea that there always exist two competing orderings in any liquids, (i) density ordering leading to crystallization and (ii) bond ordering favoring a local s…

Liquid Crystal Research AdvancementsMaterial Dynamics and PropertiesTheoretical and Computational Physics

Lubrication corrections for three-particle contribution to short-time self-diffusion coefficients in colloidal dispersions

B. Cichocki、Maria L. Ekiel-Jeżewska、Eligiusz Wajnryb1999-08-15The Journal of Chemical Physics

It is shown that the standard treatment of lubrication effects in many-particle hydrodynamic interactions leads to divergent three-particle contributions to the short-time translational self-diffusion coefficient. To resolve the problem the improved method to account for lubrication is proposed. The translational and…

Material Dynamics and PropertiesHeat and Mass Transfer in Porous MediaElectrostatics and Colloid Interactions

Towards a first-principles theory of surface thermodynamics and kinetics

C. Stampfl、H. J. Kreuzer、S. H. Payne 等 5 位作者1999-08-15arXiv

Understanding of the complex behavior of particles at surfaces requires detailed knowledge of both macroscopic and microscopic processes that take place; also certain processes depend critically on temperature and gas pressure. To link these processes we combine state-of-the-art microscopic, and macroscopic phenomenol…

Materials Science

Quasiharmonic versus exact surface free energies of Al: A systematic study employing a classical interatomic potential

U. Hansen、P. Vogl、Vincenzo Fiorentini1999-08-15Physical review. B, Condensed matter

We discuss a computationally efficient classical many-body potential designed to model the Al-Al interaction in a wide range of bonding geometries. We show that the potential yields results in excellent agreement with experiment and ab initio calculations for a number of bulk and surface properties, among others for s…

Advanced Chemical Physics StudiesMicrostructure and mechanical propertiesnanoparticles nucleation surface interactions

Magnon Linewidth Broadening due to Magnon-Phonon Interactions in Colossal Magnetoresistance Manganites

Nobuo Furukawa1999-08-15Journal of the Physical Society of Japan

In order to study the magnetic excitation behaviors in colossal magnetoresistance manganites, a magnon-phonon interacting system is investigated. Sudden broadening of magnon linewidth is obtained when a magnon branch crosses over an optical phonon branch. Onset of the broadening is approximately determined by the magn…

Magnetic and transport properties of perovskites and related materialsShape Memory Alloy TransformationsAdvanced Condensed Matter Physics

Calculation of the Band Gap Energy and Study of Cross Luminescence in Alkaline-Earth Dihalide Crystals

Andrés Aguado、Andrés Ayuela、José M. López 等 4 位作者1999-08-15Journal of the Physical Society of Japan

The band gap energy as well as the possibility of cross luminescence processes in alkaline-earth dihalide crystals have been calculated using the ab initio Perturbed-Ion (PI) model. The gap is calculated in several ways: as a difference between one-electron energy eigenvalues and as a difference between total energies…

Luminescence Properties of Advanced MaterialsHeusler alloys: electronic and magnetic propertiesOptical properties and cooling technologies in crystalline materials

Impedance spectroscopy study of the electrical conductivity and dielectric constant of polycrystalline LiNbO3

Silvania Lanfredi、Ana Cândida Martins Rodrigues1999-08-15Journal of Applied Physics

The electrical properties of LiNbO3 ceramic pellets were investigated by impedance spectroscopy in the temperature range of 450–800 °C. Impedance data are presented in the Nyquist plot which, in addition to the separation of grain and grain boundary contributions, allows the determination of the relaxation frequency o…

Ferroelectric and Piezoelectric MaterialsGlass properties and applicationsPhotorefractive and Nonlinear Optics

Improved one-phonon confinement model for an accurate size determination of silicon nanocrystals

Vincent Paillard、Pascal Puech、M. A. Laguna 等 6 位作者1999-08-15Journal of Applied Physics

In this article, we show how the well-known one-phonon confinement model can be improved to determine the diameter of silicon nanocrystalline spheres from the optical phonon wave-number shift, even using a physical-meaning weighting function. We show that the fundamental parameter is the knowledge of the phonon disper…

Thin-Film Transistor TechnologiesSilicon Nanostructures and PhotoluminescenceNanowire Synthesis and Applications

Surfaces of reduced and oxidizedSrTiO3from atomic force microscopy

K. Szot、W. Speier1999-08-15Physical review. B, Condensed matter

Measurements by atomic force microscopy are reported for (100) and (110) surfaces of ${\mathrm{SrTiO}}_{3}$ monocrystals prepared with different oxidizing and reducing conditions at elevated temperatures (800--1000 \ifmmode^\circ\else\textdegree\fi{}C). The morphology of the surfaces turns out to be drastically altere…

Ferroelectric and Piezoelectric MaterialsMagnetic and transport properties of perovskites and related materialsElectronic and Structural Properties of Oxides

Vapor sensing using the optical properties of porous silicon Bragg mirrors

P. A. Snow、E.K. Squire、P. St. J. Russell 等 4 位作者1999-08-15OpenAlex

Large wavelength shifts have been measured in the reflectivity spectra of Bragg mirrors etched in porous silicon after exposure of the mirrors to vapor from organic solvents. The shift in the Bragg wavelength of the mirror arises from refractive index changes, induced by capillary condensation of the vapor in the meso…

Silicon Nanostructures and PhotoluminescenceNanowire Synthesis and Applications

Predicted band-gap pressure coefficients of all diamond and zinc-blende semiconductors: Chemical trends

Su‐Huai Wei、Alex Zunger1999-08-15OpenAlex

We have studied systematically the chemical trends of the band-gap pressure coefficients of all group IV, III-V, and II-VI semiconductors using first-principles band-structure method. We have also calculated the individual ``absolute'' deformation potentials of the valence-band maximum (VBM) and conduction-band minimu…

High-pressure geophysics and materialsSemiconductor materials and devicesElectronic and Structural Properties of Oxides

Thermodynamic and Activation Parameters for Dissociation of [CpCr(CO) 3 ] 2 and [Cp*Cr(CO) 3 ] 2 into Paramagnetic Monomers from 1 H NMR Shift and Line Width Measurements

David C. Woska、Yaping Ni、Bradford B. Wayland1999-08-14Inorganic Chemistry

1 H NMR spectra for solutions prepared by dissolution of [CpCr(CO) 3 ] 2 and [Cp*Cr(CO) 3 ] 2 in toluene in the temperature range 190−390 K are interpreted in terms of thermodynamic and kinetic parameters for dissociation of the diamagnetic dimers into the paramagnetic monomers CpCr(CO) 3 and Cp*Cr(CO) 3 . There is no…

Organometallic Complex Synthesis and CatalysisMagnetism in coordination complexesLanthanide and Transition Metal Complexes

Polymer Coatings by Rapid Expansion of Suspensions in Supercritical Carbon Dioxide

Jae‐Jin Shim、Matthew Z. Yates、Keith P. Johnston1999-08-14Industrial & Engineering Chemistry Research

Suspensions of poly(2-ethylhexyl acrylate) in supercritical CO 2 formed by dispersion polymerization with a poly(dimethylsiloxane)-based surfactant were sprayed to form uniform films. The viscosity reduction of the dispersed phase caused by dissolved CO 2 is crucial for atomization to produce fine droplets, and for co…

Phase Equilibria and ThermodynamicsInjection Molding Process and PropertiesPolymer Foaming and Composites

Sonochemistry and Sonoluminescence in Aqueous AuCl4- Solutions in the Presence of Surface-Active Solutes

Kate Barbour、Muthupandian Ashokkumar、Rachel A. Caruso 等 4 位作者1999-08-14The Journal of Physical Chemistry B

The 515 kHz ultrasound-initiated reduction of AuCl 4 - to Au(0) was examined as a function of the concentration of various surface-active solutes. The amount of AuCl 4 - reduced in the presence of ethanol, propan-1-ol, and butan-1-ol was found to be dependent on the surface excess of the alcohol at the gas/solution in…

Innovative Microfluidic and Catalytic Techniques InnovationUltrasound and Cavitation PhenomenaPhotoacoustic and Ultrasonic Imaging

Structure of Charged Dendrimer Solutions As Seen by Small-Angle Neutron Scattering

Giovanni Nisato、Robert Ivkov、Eric J. Amis1999-08-14Macromolecules

We present results of small-angle neutron scattering (SANS) investigations into the characteristics of charged poly(amidoamine) (PAMAM) dendrimer solutions in deuterium oxide. The study shows that ionic strength, surface charge density, and concentration are the crucial parameters controlling the degree of structural…

Polymer Surface Interaction StudiesDendrimers and Hyperbranched PolymersElectrostatics and Colloid Interactions

Transient Target Patterns in Phase Separating Filled Polymer Blends

Alamgir Karim、Jack F. Douglas、Giovanni Nisato 等 5 位作者1999-08-14Macromolecules

Recent simulations suggest that the presence of filler particles in a phase separating blend can induce the development of composition waves having the symmetry of the filler particles. We investigate these predictions through atomic force microscopy (AFM) measurements on ultrathin ( L ≈ 100 nm) polystyrene and poly(v…

Surfactants and Colloidal SystemsPolymer Surface Interaction StudiesBlock Copolymer Self-Assembly

Structural Effects on the Oxidation of HCOOH by Bismuth-Modified Pt(111) Electrodes with (100) Monatomic Steps

Sean P. E. Smith、Karen F. Ben-Dor、Héctor D. Abruña1999-08-14Langmuir

Significant enhancements in the electrocatalytic oxidation of HCOOH are obtained on deliberately stepped platinum surfaces with (111) terraces and (100) monatomic steps when bismuth is deposited on terrace and/or step sites. The bismuth-modified surfaces with higher step densities/narrower terrace widths exhibit highe…

Electrocatalysts for Energy ConversionCatalytic Processes in Materials ScienceCatalysis and Oxidation Reactions

Proton Environments in Hydrous Aluminosilicate Glasses: A 1H MAS, 1H/27Al, and 1H/23Na TRAPDOR NMR Study

Qiang Zeng、H. Nekvasil、Clare P. Grey1999-08-14The Journal of Physical Chemistry B

Hydrous aluminosilicate glasses of composition NaAlSi 8 O 18, NaAlSi 3 O 8, NaAlSi 2 O 6, and NaAlSiO 4 have been studied with 1 H MAS, and 1 H/ 27 Al, and 1 H/ 23 Na TRAPDOR NMR spectroscopy. Two different environments for molecular water were identified. Three 1 H OH resonances (1.5, ca. 3.5, and 5−6 ppm) are observ…

Glass properties and applicationsAdvanced NMR Techniques and ApplicationsSolid-state spectroscopy and crystallography