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NMR in the SPINE Structural Proteomics project

Ab E、Roger Atkinson、Lucia Banci 等 34 位作者2006-09-19Acta Crystallographica Section D Biological Crystallography

This paper describes the developments, role and contributions of the NMR spectroscopy groups in the Structural Proteomics In Europe (SPINE) consortium. Focusing on the development of high-throughput (HTP) pipelines for NMR structure determinations of proteins, all aspects from sample preparation, data acquisition, dat…

Protein Structure and DynamicsMass Spectrometry Techniques and ApplicationsEnzyme Structure and Function

Conductivity Percolation in Loosely Compacted Microcrystalline Cellulose: An in Situ Study by Dielectric Spectroscopy during Densification

Martin Nilsson、Göran Frenning、Johan Gråsjö 等 5 位作者2006-09-19The Journal of Physical Chemistry B

The present study aims at contributing to a complete understanding of the water-induced ionic charge transport in cellulose. The behavior of this transport in loosely compacted microcrystalline cellulose (MCC) powder was investigated as a function of density utilizing a new type of measurement setup, allowing for diel…

High voltage insulation and dielectric phenomenaAdvanced Cellulose Research StudiesLignin and Wood Chemistry

Effects of Forced Solution Flow on Protein-Crystal Quality and Growth Process

A. Kadowaki、Izumi Yoshizaki、Satoshi Adachi 等 6 位作者2006-09-19Crystal Growth & Design

X-ray diffraction experiments were performed to study the effect of forced solution flow on protein-crystal quality. The tetragonal crystals of hen egg white lysozyme were grown under flow in the rate range of 0 (quiescent condition) to 1000 μm/s. The quality of the crystals grown under flow was superior to that of cr…

Enzyme Structure and FunctionCrystallization and Solubility Studiesnanoparticles nucleation surface interactions

Characterization, electrical and magnetic properties of polyaniline/maghemite nanocomposites

Panagiotis Dallas、N. Moutis、E. Devlin 等 5 位作者2006-09-19Nanotechnology

Composites of polyaniline with nanocrystalline maghemite capped with oleic acid were synthesized at various maghemite loadings and their electrical and magnetic properties were studied from 5 to 300 K. Chemisorption of oleic acid by the surface iron atoms provided excellent dispersion of maghemite in organic solvents…

Supercapacitor Materials and FabricationAdvanced Sensor and Energy Harvesting MaterialsConducting polymers and applications

Tuning the architecture of MgO nanostructures by chemical vapour transport and condensation

Yufeng Hao、Guowen Meng、Ye Zhou 等 7 位作者2006-09-19Nanotechnology

In this paper, we demonstrate the potential of chemical vapour transport and condensation in tuning the architecture of a series of MgO nanostructures through adjusting experimental parameters. Different oxygen partial pressures lead to corresponding well-faceted nanostructures, such as nanowires, cubes, orthogonally…

ZnO doping and propertiesElectronic and Structural Properties of OxidesMagnesium Oxide Properties and Applications

Influence of Phonon Dispersion on Transient Thermal Response of Silicon-on-Insulator Transistors Under Self-Heating Conditions

Rodrigo Escobar、Cristina H. Amon2006-09-19ASME Journal of Heat and Mass Transfer

Lattice Boltzmann method (LBM) simulations of phonon transport are performed in one-dimensional (1D) and 2D computational models of a silicon-on-insulator transistor, in order to investigate its transient thermal response under Joule heating conditions, which cause a nonequilibrium region of high temperature known as…

Heat Transfer and OptimizationThermal properties of materialsThermal Radiation and Cooling Technologies

Stainless Steels Can Be Cathodically Protected Using Energy Stored at the Marine Sediment/Seawater Interface

Leda H. Orfei、Silvia Simison、Juan Pablo Busalmen2006-09-19Environmental Science & Technology

Laboratory-scale experiments were performed in which the corrosion protection of stainless steels in seawater was afforded by cathodic protection. The method was implemented for the first time using the potential difference at the marine sediment/seawater interface as the only source of electric power. Graphite electr…

Corrosion Behavior and InhibitionMicrobial Fuel Cells and Bioremediation

Cooperative Interactions in Supramolecular Aggregates: Linear and Nonlinear Responses in Calix[4]arenes

Ayan Datta、Francesca Terenziani、Anna Painelli2006-09-19ChemPhysChem

The linear and nonlinear optical polarizabilities of donor-acceptor (D-pi-A) chromophores in confined geometries of calix[4]arenes are investigated through a model for interacting polar-polarizable molecules. Both the linear polarizability (alpha) and the first hyperpolarizability (beta) decrease with increasing the i…

Crystallography and molecular interactionsPorphyrin and Phthalocyanine ChemistryNonlinear Optical Materials Research

Investigation of the Pronounced Medium Effects Observed in the Voltammetry of the Highly Charged Lacunary Anions [α-SiW11O39]8-and [α-PW11O39]7-

Si‐Xuan Guo、Andrew W. A. Mariotti、Christine Schlipf 等 5 位作者2006-09-19Inorganic Chemistry

A detailed study is reported of the influence of protons, metal cations, and media on the redox chemistry of lacunary anions [alpha-SiW11O39]8- and [alpha-PW11O39]7- of high formal negative charge. Each anion displayed a single chemically reversible one-electron reduction process in carefully dried aprotic CH3CN solut…

Metal-Organic Frameworks: Synthesis and ApplicationsPolyoxometalates: Synthesis and ApplicationsAdvanced Nanomaterials in Catalysis

A Supramolecular Chiroptical Switch Using an Amorphous Azobenzene Polymer

Mi‐Jeong Kim、Sung Jong Yoo、Dug Young Kim2006-09-19Advanced Functional Materials

Abstract Supramolecular chirality has been optically induced in an achiral epoxy‐based polymer containing photoresponsive azobenzene groups. The origin of this effect is the long‐range helical arrangement of the azobenzenes, which extends through the entire thickness of the film. The helicity induced by the handedness…

Liquid Crystal Research AdvancementsSynthesis and Properties of Aromatic CompoundsPhotochromic and Fluorescence Chemistry

Non-Fermi-liquid behavior in transport across carbon nanotube quantum dots

Leonhard Mayrhofer、Milena Grifoni2006-09-19Physical Review B

A low energy theory for nonlinear transport in finite-size single-wall carbon nanotubes, based on a microscopic model for the interacting ${p}_{z}$ electrons and successive bosonization, is presented. Due to the multiple degeneracy of the energy spectrum diagonal as well as off-diagonal (coherences) elements of the re…

Carbon Nanotubes in CompositesGraphene research and applicationsMechanical and Optical Resonators

Methylglyoxal Is an Intermediate in the Biosynthesis of 6-Deoxy-5-ketofructose-1-phosphate: A Precursor for Aromatic Amino Acid Biosynthesis in Methanocaldococcus jannaschii

Robert H. White、Huimin Xu2006-09-19Biochemistry

A biosynthetic pathway is proposed for creating 6-deoxy-5-ketofructose-1-phosphate (DKFP), a precursor sugar for aromatic amino acid biosynthesis in Methanocaldococcus jannaschii. First, two possible routes were investigated to determine if a modified, established biosynthetic pathway could be responsible for generati…

Microbial Metabolic Engineering and BioproductionEnzyme Structure and FunctionAmino Acid Enzymes and Metabolism

Level Structure of InAs Quantum Dots in Two-Dimensional Assemblies

D. Steiner、Assaf Aharoni、Uri Banin 等 4 位作者2006-09-19Nano Letters

The electronic level structure of colloidal InAs quantum dots (QDs) in two-dimensional arrays, forming a QD-solid system, was probed using scanning tunneling spectroscopy. The band gap is found to reduce compared to that of the corresponding isolated QDs. Typically, the electron (conduction-band) ground state red shif…

Semiconductor Quantum Structures and DevicesQuantum Dots Synthesis And PropertiesChalcogenide Semiconductor Thin Films

SPINE high-throughput crystallization, crystal imaging and recognition techniques: current state, performance analysis, new technologies and future aspects

Ian M. Berry、Orly Dym、Robert Esnouf 等 10 位作者2006-09-19Acta Crystallographica Section D Biological Crystallography

This paper reviews the developments in high-throughput and nanolitre-scale protein crystallography technologies within the remit of workpackage 4 of the Structural Proteomics In Europe (SPINE) project since the project's inception in October 2002. By surveying the uptake, use and experience of new technologies by SPIN…

Protein Structure and DynamicsAdvanced Proteomics Techniques and ApplicationsEnzyme Structure and Function

Control of Inhibitor Squeeze Through Mechanistic Understanding of Inhibitor Chemistry

Mason B. Tomson、Amy T. Kan、Gongmin Fu2006-09-19SPE Journal

Summary Chemical scale inhibitors are commonly used to prevent or inhibit scale formation in production. The most economic treatment of scale inhibitor is normally through chemical squeeze. However, there is little agreement regarding the primary mechanism by which the threshold scale inhibitors are retained in produc…

Calcium Carbonate Crystallization and InhibitionMinerals Flotation and Separation TechniquesCrystallization and Solubility Studies

Axially Chiral Directly β,β-Linked Bisporphyrins: Synthesis and Stereostructure

Gerhard Bringmann、Stefan Rüdenauer、Daniel C. G. Götz 等 5 位作者2006-09-19Organic Letters

[reaction: see text] A novel type of "superbiaryl", the first porphyrin dimers with an intrinsically chiral structure, has been prepared. The atropo-enantiomers were configurationally assigned by HPLC-CD combined with quantum chemical CD calculations.

Photosynthetic Processes and MechanismsPorphyrin and Phthalocyanine ChemistryMolecular spectroscopy and chirality

Nano-structured micropatterns by combination of block copolymer self-assembly and UV photolithography

Blazej Gorzolnik、Petra Mela、Michael Moeller2006-09-19Nanotechnology

A procedure for the fabrication of nano-structured micropatterns by direct UV photo-patterning of a monolayer of a self-assembled block copolymer/transition metal hybrid structure is described. The method exploits the selective photochemical modification of a self-assembled monolayer of hexagonally ordered block copol…

Advanced Polymer Synthesis and CharacterizationBlock Copolymer Self-AssemblyNanofabrication and Lithography Techniques

High-throughput sample handling and data collection at synchrotrons: embedding the ESRF into the high-throughput gene-to-structure pipeline

Antonia Beteva、F. Cipriani、S. Cusack 等 32 位作者2006-09-19Acta Crystallographica Section D Biological Crystallography

An automatic data-collection system has been implemented and installed on seven insertion-device beamlines and a bending-magnet beamline at the ESRF (European Synchrotron Radiation Facility) as part of the SPINE (Structural Proteomics In Europe) development of an automated structure-determination pipeline. The system…

Protein Structure and DynamicsRNA and protein synthesis mechanismsEnzyme Structure and Function

Quantification of the variation in percentage identity for protein sequence alignments

GPS Raghava、Geoffrey J. Barton2006-09-19BMC Bioinformatics

BACKGROUND: Percentage Identity (PID) is frequently quoted in discussion of sequence alignments since it appears simple and easy to understand. However, although there are several different ways to calculate percentage identity and each may yield a different result for the same alignment, the method of calculation is…

Genomics and Phylogenetic StudiesProtein Structure and DynamicsEnzyme Structure and Function

The impact of protein characterization in structural proteomics

Arie Geerlof、James Brown、Bruno Coutard 等 16 位作者2006-09-19Acta Crystallographica Section D Biological Crystallography

Protein characterization plays a role in two key aspects of structural proteomics. The first is the quality assessment of the produced protein preparations. Obtaining well diffracting crystals is one of the major bottlenecks in the structure-determination pipeline. Often, this is caused by the poor quality of the prot…

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and ApplicationsEnzyme Structure and Function