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DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment

Erik S. Wright2015-10-06BMC Bioinformatics

BACKGROUND: Alignment of large and diverse sequence sets is a common task in biological investigations, yet there remains considerable room for improvement in alignment quality. Multiple sequence alignment programs tend to reach maximal accuracy when aligning only a few sequences, and then diminish steadily as more se…

Genomics and Phylogenetic StudiesProtein Structure and DynamicsEnzyme Structure and Function

Progress in Synthesis of Highly Active and Stable Nickel‐Based Catalysts for Carbon Dioxide Reforming of Methane

Sibudjing Kawi、Yasotha Kathiraser、Jun Ni 等 6 位作者2015-10-06ChemSusChem

In recent decades, rising anthropogenic greenhouse gas emissions (mainly CO2 and CH4 ) have increased alarm due to escalating effects of global warming. The dry carbon dioxide reforming of methane (DRM) reaction is a sustainable way to utilize these notorious greenhouse gases. This paper presents a review of recent pr…

Catalytic Processes in Materials ScienceCatalysts for Methane ReformingCarbon dioxide utilization in catalysis

Self-Assembly of Perylene Imide Molecules into 1D Nanostructures: Methods, Morphologies, and Applications

Shuai Chen、Paul M. Slattum、Chuanyi Wang 等 4 位作者2015-10-06Chemical Reviews

ADVERTISEMENT RETURN TO ISSUEPREVReviewNEXTSelf-Assembly of Perylene Imide Molecules into 1D Nanostructures: Methods, Morphologies, and ApplicationsShuai Chen†‡, Paul Slattum∥, Chuanyi Wang*†, and Ling Zang*§View Author Information† Laboratory of Environmental Sciences and Technology, Xinjiang Technical Institute of P…

Organic Electronics and PhotovoltaicsConducting polymers and applicationsMolecular Junctions and Nanostructures

Topologically robust sound propagation in an angular-momentum-biased graphene-like resonator lattice

Alexander B. Khanikaev、Romain Fleury、S. Hossein Mousavi 等 4 位作者2015-10-06Nature Communications

Topological insulators do not allow conduction in the bulk, yet they support edge modes that travel along the boundary only in one direction, determined by the carried electron spin, with inherent robustness to defects and disorder. Topological insulators have inspired analogues in photonics and optics, in which one-w…

Metamaterials and Metasurfaces ApplicationsTopological Materials and PhenomenaPhotonic Crystals and Applications

Selective Laser Melting of Titanium Alloys and Titanium Matrix Composites for Biomedical Applications: A Review

Lai‐Chang Zhang、Hooyar Attar2015-10-06Advanced Engineering Materials

Titanium materials are ideal targets for selective laser melting (SLM), because they are expensive and difficult to machinery using traditional technologies. After briefly introducing the SLM process and processing factors involved, this paper reviews the recent progresses in SLM of titanium alloys and their composite…

Additive Manufacturing Materials and ProcessesAdditive Manufacturing and 3D Printing TechnologiesTitanium Alloys Microstructure and Properties

Effect of Testing Rate on Adhesion Properties of Benzoyl-Peroxide-Cured ENR 25/NBR Blend Adhesive Using Gum Rosin and Coumarone-Indene Resin as Tackifiers

K. W. Soo、Baharin Azahari、B. T. Poh2015-10-06The Journal of Adhesion

Dependence of adhesion properties of benzoyl-peroxide-cured epoxidized natural rubber (ENR 25)/acrylonitrile-butadiene rubber (NBR) blend adhesive on testing rate was systematically studied. Coumarone-indene resin and gum rosin were used as tackifiers. Toluene was used as solvent throughout the study. The SHEEN hand c…

Polymer Nanocomposites and PropertiesEpoxy Resin Curing ProcessesSynthesis and properties of polymers

Magnetic-field-induced charge redistribution in disordered graphene double quantum dots

K. L. Chiu、M. R. Connolly、Alessandro Cresti 等 6 位作者2015-10-06Physical Review B

We have studied the transport properties of a large graphene double quantum dot under the influence of a background disorder potential and a magnetic field. At low temperatures, the evolution of the charge-stability diagram as a function of the $B$ field is investigated up to 10 T. Our results indicate that the chargi…

Graphene research and applicationsQuantum and electron transport phenomenaTopological Materials and Phenomena

Temperature Dependence of the Optical Band Gap and Optical Parameters of Tetramethyl Ammonium Tetrachlorozincate (TMA)2ZnCl4 single Crystals Around the Normal and Incommensurate Phase Transitions

A. Abu El‐Fadl、A. M. Nashaat2015-10-06The Open Materials Science Journal

Single crystals of tetramethylammonium tetrachlorozincate [N(CH3)4]ZnCl4 abbreviated hereafter as (TMA)2ZnCl4 were grown using the slow evaporation technique at 315 K. The X-ray powder diffraction patterns indicated that [N(CH)]ZnCl belongs to the orthorhombic system with Pmcn symmetry at room temperature. The lattice…

Crystal structures of chemical compoundsNonlinear Optical Materials ResearchSolid-state spectroscopy and crystallography

Helical Polybissilsesquioxane Bundles Prepared Using a Self‐Templating Approach

Qingfeng Wang、Shu-Wei Lin、Jiaming Qin 等 6 位作者2015-10-06Chirality

Polybissilsesquioxanes with single-handed helical morphologies attracted much attention during the last decade, which could be applied as asymmetric catalysts and chiral stationary phases. Herein, a pair of chiral biphenylene-bridged bissilsesquioxanes were synthesized. They self-assembled into helical bundles in etha…

Supramolecular Chemistry and ComplexesChemical Synthesis and AnalysisSilicone and Siloxane Chemistry

α-Glucosidase activity of oleanolic acid and its oxidative metabolites: DFT and Docking studies

El Hassane Anouar、Nur Shida Zakaria、Ali Alsalme 等 4 位作者2015-10-06Mini-Reviews in Medicinal Chemistry

A natural pentacyclic triterpenoid oleanolic acid 1 and its biotransformed metabolites 2-3 are potential α-glucosidase inhibitors. To elucidate the inhibitory mechanism of compounds 1, 2 and 3 against α-glucosidase, we calculated (i) their electronic and optical properties using DFT and TD-DFT at the B3LYP/6-31G(d) le…

Nonlinear Optical Materials ResearchChemical and Physical Properties in Aqueous SolutionsMorinda citrifolia extract uses

Monodisperse hard rods in external potentials

Benaoumeur Bakhti、Michael Karbach、Philipp Maass 等 4 位作者2015-10-06Physical Review E

We consider linear arrays of cells of volume V(c) populated by monodisperse rods of size σV(c),σ=1,2,..., subject to hardcore exclusion interaction. Each rod experiences a position-dependent external potential. In one application we also examine effects of contact forces between rods. We employ two distinct methods of…

Material Dynamics and PropertiesTheoretical and Computational PhysicsAdvanced Thermodynamics and Statistical Mechanics

Structural, mechanical, and electrical properties of carbon nanoparticles synthesized from diesel

Mohammad Abul Hossain、Shahid Ul Islam、Farzana A. Chowdhury 等 10 位作者2015-10-06Fullerenes Nanotubes and Carbon Nanostructures

We studied the elemental analysis, structural morphology, mechanical, and electrical properties of carbon nanoparticles synthesized from diesel. The spherical carbon particle size in the range of about 10 to 80 nm in diameter was observed in scanning electron microscope (SEM) studies that were identified by Atomic for…

Carbon Nanotubes in CompositesGraphene research and applicationsMolecular Junctions and Nanostructures

Hydrophobic Scratch Resistant UV-Cured Epoxy Coating

Marco Sangermano、Alexandre Perrot、Arnaud Gigot 等 6 位作者2015-10-06Macromolecular Materials and Engineering

A selective modification of the surface properties of UV-cured epoxy films was achieved, with an important enhancement of hydrophobicity and scratch resistance, by dispersion on the UV-curable formulations of fluorinated functionalized silica particles. The photopolymerization process was investigated and the films we…

Surface Modification and SuperhydrophobicitySilicone and Siloxane ChemistryPhotopolymerization techniques and applications

A novel immunoglobulin G monolayer silver bio-nanocomposite

Cristian Matea、Teodora Mocan、Florin Zaharie 等 5 位作者2015-10-06Chemistry Central Journal

BACKGROUND: Nanoparticles have a large number of surface atoms, which translates into a significant increase in the surface energy. Once introduced in a biological environment they tend to interact with proteins and form a protein corona shell. The aim of this study was to develop a novel, silver based, bio-nanocompos…

Nanoparticles: synthesis and applicationsGold and Silver Nanoparticles Synthesis and ApplicationsPolymer Surface Interaction Studies

Thickness and Microdomain Orientation of Asymmetric PS-b-PMMA Block Copolymer Films Inside Periodic Gratings

Federico Ferrarese Lupi、Giulia Aprile、Tommaso Jacopo Giammaria 等 9 位作者2015-10-06ACS Applied Materials & Interfaces

The ordering process of asymmetric PS-b-PMMA block copolymers (BCPs) is investigated on flat SiO2 surfaces and on topographically patterned substrates. The topographic patterns consist of periodic gratings of 10 trenches defined by conventional top-down approaches and subsequently neutralized using a P(S-r-MMA) random…

Rheology and Fluid Dynamics StudiesBlock Copolymer Self-AssemblyFluid Dynamics and Thin Films

Synthesis of Upconverting Hydrogel Nanocomposites Using Thiol‐Ene Click Chemistry: Template for the Formation of Dendrimer‐Like Gold Nanoparticle Assemblies

Brahmaiah Meesaragandla、Venkataramanan Mahalingam2015-10-06Chemistry - A European Journal

The synthesis of upconverting hydrogel nanocomposites by base-catalyzed thiol-ene click reaction between 10-undecenoic acid capped Yb(3+)/Er(3+)-doped NaYF4 nanoparticles and pentaerythritol tetrakis(3-mercaptopropionate) (PETMP) as tetrathiol monomer is reported. This synthetic strategy for nanocomposite gels is quit…

Luminescence Properties of Advanced MaterialsNanoplatforms for cancer theranosticsNanocluster Synthesis and Applications

Properties of Particleboard Produced from Red Pine (Pinus brutia) Chips and Lavender Stems

Hasan Hüseyin Taş、Yılmaz Sevinçli2015-10-06BioResources

The usability of lavender stems along with red pine chips was investigated as raw materials in the production of particleboard. Medium-density particleboard was manufactured using urea formaldehyde glue at three different ratios for five different mixture groups containing lavender stems and red pine chips. Some physi…

Wood Treatment and PropertiesNatural Fiber Reinforced CompositesLignin and Wood Chemistry

Electromagnetic Enhancement of Graphene Raman Spectroscopy by Ordered and Size-Tunable Au Nanostructures

Shuguang Zhang、Xingwang Zhang、Xin Liu2015-10-06Nanoscale Research Letters

The size-controllable and ordered Au nanostructures were achieved by applying the self-assembled monolayer of polystyrene microspheres. Few-layer graphene was transferred directly on top of Au nanostructures, and the coupling between graphene and the localized surface plasmons (LSPs) of Au was investigated. We found t…

Graphene research and applicationsGold and Silver Nanoparticles Synthesis and ApplicationsPlasmonic and Surface Plasmon Research

Synthesis of WS2 and WSe2 nanowires on stainless steel coupon by reaction under autogenic pressure at elevated temperature method

R. Yuvasravan、G. Apsana、P. P. George 等 7 位作者2015-10-06Applied Nanoscience

The novel flower-like WE 2 ( E = S or Se) nanoflakes are synthesized and the growth of WS 2 and WSe 2 nanowires on stain less steel coupons (SSC) is observed by reaction under autogenic pressure at elevated temperature technique between the metallic tungsten and chalcogen powders at 750 °C for 3 h. Powder X-ray diffra…

2D Materials and ApplicationsChalcogenide Semiconductor Thin FilmsMXene and MAX Phase Materials

Graphene Oxide–Carbon Nanotubes Hybrids: Preparation, Characterization, and Application in Phenol Formaldehyde Resin

Xiang‐Feng Wu、Yong-Ke Zhao、Zehua Zhao 等 5 位作者2015-10-06Journal of Macromolecular Science Part B

Graphene oxide–carbon nanotubes hybrids were prepared by using methylene diphenyl diisocyanate as a bridging agent. The as-prepared hybrids were introduced in phenol formaldehyde resin to fabricate polymer-based composites. Fourier transform infrared spectroscopy, transmission electrical microscopy, and X-ray diffract…

Carbon Nanotubes in CompositesGraphene research and applicationsFiber-reinforced polymer composites