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Crystallization and preliminary X-ray crystallographic analysis of YfcM: an important factor for EF-P hydroxylation

Kan Kobayashi、Takehiro Suzuki、Naoshi Dohmae 等 5 位作者2014-08-27Acta Crystallographica Section F Structural Biology Communications

Elongation factor P (EF-P) plays an essential role in the translation of polyproline-containing proteins in bacteria. It becomes functional by the post-translational modification of its highly conserved lysine residue. It is first β-lysylated by PoxA and then hydroxylated by YfcM. In this work, the YfcM protein from E…

Protein Structure and DynamicsRNA and protein synthesis mechanismsEnzyme Structure and Function

Sensitive Hydrogen Sensors Based on Gold–Palladium Double Nanoblock

Tae‐Woo Lee、Da Eun Lee、Soon-Hong Kwon2014-08-27IEEE Photonics Technology Letters

We suggest a new plasmonic hydrogen sensor based on a metal-air-metal cavity structure. The proposed cavity structure shows a high sensing performance with a large resonant wavelength shift of 84 nm due to strong plasmonic coupling at an air gap size of 8 nm. The cavity resonance has a narrow linewidth of 72 nm by sup…

Gold and Silver Nanoparticles Synthesis and ApplicationsAdvanced biosensing and bioanalysis techniquesPlasmonic and Surface Plasmon Research

Diversity of the Dimer Structures of Toluene: Exploration by the GRRM Method

Kio Omori、Hideyuki Nakayama、Kikujiro Ishii2014-08-27Chemistry Letters

Abstract Quantum chemical calculations were performed to explore the equilibrium structures (EQs) of the toluene dimer using the GRRM (global reaction route mapping) method, and 23 EQs were found. 11 EQs among these exhibited only slight changes in the structure and relative order of the stability even when the struct…

Crystallography and molecular interactionsNuclear Physics and ApplicationsX-ray Diffraction in Crystallography

ENHANCED DEPTH IMAGING OPTICAL COHERENCE TOMOGRAPHY FEATURES IN A YOUNG CASE OF PRIMARY HYPEROXALURIA TYPE 1

Gülce Gökgöz Özışık、Leyla Asena、Begüm Bulam 等 4 位作者2014-08-27Retinal Cases & Brief Reports

In Brief Purpose: To describe the enhanced depth imaging optical coherence tomography findings in a very young case of Type 1 primary hyperoxaluria. Methods: Observational case report of a young patient who underwent clinical examination and enhanced depth imaging optical coherence tomography evaluation. Results: A 4-…

Kidney Stones and Urolithiasis TreatmentsLanthanide and Transition Metal ComplexesBiomedical Research and Pathophysiology

Direct Voltammetric Determination of Redox‐Active Iron in Carbon Nanotubes

Wei Zhe Teo、Martin Pumera2014-08-27ChemPhysChem

With the advances in nanotechnology over the past decade, consumer products are increasingly being incorporated with carbon nanotubes (CNTs). As the harmful effects of CNTs are suggested to be primarily due to the bioavailable amounts of metallic impurities, it is vital to detect and quantify these species using sensi…

Electrochemical sensors and biosensorsConducting polymers and applicationsElectrochemical Analysis and Applications

Cloning, expression, purification, crystallization and preliminary crystallographic analysis of the C-terminal domain of Par-4 (PAWR)

Udaya K. Tiruttani Subhramanyam、Jan Kubíček、Ulf Eidhoff 等 4 位作者2014-08-27Acta Crystallographica Section F Structural Biology Communications

Prostate apoptosis response-4 protein is an intrinsically disordered pro-apoptotic protein with tumour suppressor function. Par-4 is known for its selective induction of apoptosis in cancer cells only and its ability to interact with various apoptotic proteins via its C-terminus. Par-4, with its unique function and va…

Protein Structure and DynamicsHeat shock proteins researchEnzyme Structure and Function

Acceleration and motion‐correction techniques for high‐resolution intravascular MRI

Shashank Hegde、Yi Zhang、Paul A. Bottomley2014-08-27Magnetic Resonance in Medicine

PURPOSE: High-resolution intravascular (IV) MRI is susceptible to degradation from physiological motion and requires high frame-rates for true endoscopy. Traditional cardiac-gating techniques compromise efficiency by reducing the effective scan rate. Here we test whether compressed sensing (CS) reconstruction and unga…

Cardiac Imaging and DiagnosticsAdvanced MRI Techniques and ApplicationsLanthanide and Transition Metal Complexes

Assessment of the antimicrobial activity of potentially active substances (nanoparticled and non‐nanoparticled) against cheese‐derived micro‐organisms

Karen A‐M O' Callaghan、Joseph P. Kerry2014-08-27International Journal of Dairy Technology

This study evaluated the antimicrobial potential of various naturally occurring substances, for use as active agents in cheese packaging. Sorbic acid and benzoic acid were examined as standard‐sized and nanoparticled solutions. Rosemary, curcumin and ascorbic acid were employed as nanoparticled solutions only, while n…

Essential Oils and Antimicrobial ActivityNanocomposite Films for Food PackagingFood Safety and Hygiene

Expression, purification, crystallization and preliminary X-ray analysis of glucose-1-phosphate uridylyltransferase (GalU) fromErwinia amylovora

Mirco Toccafondi、Michele Cianci、Stefano Benini2014-08-27Acta Crystallographica Section F Structural Biology Communications

Glucose-1-phosphate uridylyltransferase from Erwinia amylovora CFPB1430 was expressed as a His-tag fusion protein in Escherichia coli. After tag removal, the purified protein was crystallized from 100 mM Tris pH 8.5, 2 M ammonium sulfate, 5% ethylene glycol. Diffraction data sets were collected to a maximum resolution…

Glycosylation and Glycoproteins ResearchEnzyme Structure and FunctionBiochemical and Molecular Research

On the Origin of Damped Electrochemical Oscillations at Silicon Anodes (Revisited)

Joris Proost、Frédéric Blaffart、Stuart Turner 等 4 位作者2014-08-27ChemPhysChem

Electrochemical oscillations accompanying the formation of anodic silica have been shown in the past to be correlated with rather abrupt changes in the mechanical stress state of the silica film, commonly associated with some kind of fracture or porosification of the oxide. To advance the understanding on the origin o…

Ferroelectric and Piezoelectric MaterialsSemiconductor materials and devicesSilicon Nanostructures and Photoluminescence

Dissipative Particle Dynamics with an Effective Pair Potential from Integral Equation Theory of Molecular Liquids

Alexander E. Kobryn、Dragan Nikolić、Olga Lyubimova 等 5 位作者2014-08-27The Journal of Physical Chemistry B

We present a method of DPD simulation based on a coarse-grained effective pair potential obtained from the DRISM-KH molecular theory of solvation. The theory is first used to calculate the radial distribution functions of all-atom solute monomers in all-atom solvent and then to invert them into an effective pair poten…

Material Dynamics and PropertiesBlock Copolymer Self-AssemblyNanopore and Nanochannel Transport Studies

Morphometric variation of S eminavis pusilla ( B acillariophyceae) and its relationship to salinity in inter‐dune lakes of the B adain J aran D esert, I nner M ongolia, C hina

Patrick Rioual、Yanbin Lü、Guoqiang Chu 等 5 位作者2014-08-27Phycological Research

Summary We used light and scanning electron microscope analyses to quantify morphometric features (valve length, width, stria density, lineola density and valve curvature) from the observation of valves representing Seminavis pusilla. Cluster analysis based on Gaussian mixture models and the expectation‐maximization a…

Genomics and Phylogenetic StudiesMarine and coastal ecosystemsDiatoms and Algae Research

Ultrasonic welding of plasticized PLA films

Neda Stoehr、Benjamin Baudrit、Edmund Haberstroh 等 6 位作者2014-08-27Journal of Applied Polymer Science

ABSTRACT Poly(lactic acid) (PLA) is a commercially available biobased material that has become an ideal material in packaging applications because of its low toxicity along with its environmentally friendly characteristics. Unfortunately, PLA is rigid and brittle. These characteristics impede its wide application. The…

biodegradable polymer synthesis and propertiesAdditive Manufacturing and 3D Printing TechnologiesSilicone and Siloxane Chemistry

Hierarchically porous graphitic carbon monoliths containing nickel nanoparticles as magnetically separable adsorbents for dyes

Yurong Liu、Baoping Lin、Dan Li 等 6 位作者2014-08-27Journal of Applied Polymer Science

ABSTRACT The hierarchically porous graphitic carbon monoliths containing nickel nanoparticles (HPGCM‐Ni) were fabricated via multi‐component co‐assembly in polyurethane (PU) foam scaffold associated with a direct carbonization process from triblock copolymer F127, diblock copolymer PDMS‐PEO, phenolic resol, and nickel…

Supercapacitor Materials and FabricationMesoporous Materials and CatalysisCovalent Organic Framework Applications

Effect of Ag doping on the microstructure and photoluminescence of ZnO nanostructures

Volodymyr Khranovskyy、I. Tsiaoussis、Martin Eriksson 等 4 位作者2014-08-27physica status solidi (a)

ZnO nanostructures were obtained by metal-organic chemical vapor deposition via Ag catalyst-assisted growth in a temperature range of 200–500 °C. Growth at temperatures above 500 °C resulted in vertically aligned ZnO nanorods (NLs). Ag incorporation into ZnO up to 0.4 at.% promoted creation of basal plane stacking fau…

ZnO doping and propertiesCopper-based nanomaterials and applicationsGa2O3 and related materials

Rapid Alchemical Free Energy Calculation Employing a Generalized Born Implicit Solvent Model

Katja Ostermeir、Martin Zacharias2014-08-27The Journal of Physical Chemistry B

Generalized Born (GB) implicit solvent models are typically used in postprocessing of molecular dynamics trajectories obtained from explicit solvent simulations to estimate binding free energies or effects of mutations in proteins. The possibility to employ a GB implicit solvent model for the calculation of rigorous f…

Protein Structure and DynamicsDNA and Nucleic Acid ChemistryEnzyme Structure and Function

Obtaining optimal structural data from X-ray powder diffraction using the Rietveld method

Shanke Liu、He Li、Jianming Liu2014-08-27Powder Diffraction

Diffraction data of calcite were collected using a conventional Bragg–Brentano diffractometer, which is a convenient, low-cost, and highly popular in-house instrument, and its crystal structure was refined by the Rietveld method. This paper shows how one treats preferred orientation and how different refinement strate…

Crystal Structures and PropertiesMachine Learning in Materials ScienceX-ray Diffraction in Crystallography

Effects of carbon and niobium on microstructure and properties for Ti bearing steels

Feng Ji、Chengning Li、Shuai Tang 等 5 位作者2014-08-27Materials Science and Technology

The objective of the study described here is to elucidate the effect of carbon and niobium on the microstructure, precipitation behaviour, and mechanical properties of 0·09C–0·11Ti () steel and 0·05C–0·025Nb–0·11Ti () steel under ultra fast cooling condition. The strengthening mechanisms are also discussed. The ferrit…

Microstructure and Mechanical Properties of SteelsHydrogen embrittlement and corrosion behaviors in metalsMetal Alloys Wear and Properties

Cloning, purification and preliminary crystallographic analysis of theHelicobacter pyloripseudaminic acid biosynthesisN-acetyltransferase PseH

Yuchen Liu、Abu Iftiaf Md Salah Ud-Din、Anna Roujeinikova2014-08-27Acta Crystallographica Section F Structural Biology Communications

Helicobacter pylori infection is the common cause of gastritis and duodenal and stomach ulcers, which have been linked to a higher risk of the development of gastric cancer. The motility that facilitates persistent infection requires functional flagella that are heavily glycosylated with 5,7-diacetamido-3,5,7,9-tetrad…

Helicobacter pylori-related gastroenterology studiesEnzyme Structure and FunctionMicrobial Metabolites in Food Biotechnology

Crystallization, melting behavior, and crystal structure of reactive, intumescent, flame‐retardant polypropylene

Guixun Li、Shaokui Cao、Shijun Zheng 等 6 位作者2014-08-27Journal of Applied Polymer Science

ABSTRACT Polypropylene (PP)/2‐({9‐[(4,6‐diamino‐1,3,5‐triazin‐2‐yl) amino]‐3,9‐dioxido‐2,4,8,10‐tetraoxa‐3,9‐diphosphaspiro [5.5] undecan‐3‐yl} oxy) ethyl methacrylate (EADP) composites were prepared by the blending of PP with EADP as a new flame‐retardant material. The nonisothermal crystallization and melting behavi…

Polymer crystallization and propertiesbiodegradable polymer synthesis and propertiesFlame retardant materials and properties