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Why protein R‐factors are so large: A self‐consistent analysis

Dennis Vitkup、Dagmar Ringe、Martin Karplus 等 4 位作者2002-01-23Proteins Structure Function and Bioinformatics

The R-factor and R-free are commonly used to measure the quality of protein models obtained in X-ray crystallography. Well-refined protein structures usually have R-factors in the range of 20-25%, whereas intrinsic errors in the experimental data are usually around 5%. We use molecular dynamics simulations to perform…

Enzyme Structure and FunctionRNA and protein synthesis mechanismsProtein Structure and Dynamics

Structural Control of Multilayered Inorganic−Organic Hybrids Derived from Mixtures of Alkyltriethoxysilane and Tetraethoxysilane

Atsushi Shimojima、Kazuyuki Kuroda2002-01-23Langmuir

Multilayered inorganic−organic hybrids were prepared by cohydrolysis and polycondensation of alkyltriethoxysilanes (C n TES, n = 8−18) and tetraethoxysilane (TEOS). Thin films were deposited from homogeneous solutions containing the oligomeric species by dip-coating. Self-assembly of co-condensed oligomers into lamell…

Polyoxometalates: Synthesis and ApplicationsSilicone and Siloxane ChemistryMesoporous Materials and Catalysis

Polarized infrared and Raman spectra of KGd(WO4)2 and their interpretation based on normal coordinate analysis

L. Macalik、J. Hanuza、А. А. Каминский2002-01-23Journal of Raman Spectroscopy

Abstract The direction of the transition dipole moments for the vibrations of the single W O W and double W O O W oxygen bridges in layered scheelite tungstates is derived from the Polarized infrared and Raman spectra of the KGd(WO 4 ) 2 single crystal. Their experimental values are compared with those obtained from t…

Inorganic Fluorides and Related CompoundsSolid-state spectroscopy and crystallographyLuminescence Properties of Advanced Materials

Synthesis and Characterization of Thin Films of Cadmium Oxide

Antonino Gulino、Francesco Castelli、Paolo Dapporto 等 5 位作者2002-01-23Chemistry of Materials

The Cd(C 5 F 6 HO 2 ) 2 ·2H 2 O complex was investigated by X-ray crystallography, mass spectroscopy, 1 H NMR spectroscopy, TG−DTG thermal measurements, and infrared transmittance spectroscopy. X-ray single-crystal data show that the cadmium ion is chelated by the oxygens of the hfa anion ligand and bound to the oxyge…

Gas Sensing Nanomaterials and SensorsZnO doping and propertiesAnalytical Chemistry and Sensors

Room-temperature magnetic bistability in organic radical crystals: Paramagnetic-diamagnetic phase transition in 1,3,5-trithia-2,4,6-triazapentalenyl

Wataru Fujita、Kunio Awaga、Hiroyuki Matsuzaki 等 4 位作者2002-01-23Physical review. B, Condensed matter

An organic radical, 1,3,5-trithia-2,4,6-triazapentalenyl (TTTA), exhibits a first-order phase transition between a paramagnetic high-temperature (HT) phase and a diamagnetic low-temperature (LT) phase, with a surprisingly wide thermal hysteresis loop over the temperature range 230--305 K. The crystal structure of the…

Electron Spin Resonance StudiesMagnetism in coordination complexesLanthanide and Transition Metal Complexes

Electro-Optic Switching by Helicene Liquid Crystals

Colin Nuckolls、Renfan Shao、Won-Gun Jang 等 6 位作者2002-01-23Chemistry of Materials

Binary mixtures of the aggregating helicene 1 with dodecane have, at dodecane concentrations >30 vol %, a nematic liquid crystalline phase and, at dodecane concentrations ≲5 vol %, a hexagonal columnar liquid crystalline phase. The helical structure with donor and acceptor groups at opposite ends gives rise to a molec…

Synthesis and Properties of Aromatic CompoundsMolecular spectroscopy and chiralityLiquid Crystal Research Advancements

Effect of Polyelectrolyte Charge Density on the Adsorption and Desorption Behavior on Mica

Orlando J. Rojas、Marie Ernstsson、Ronald D. Neuman 等 4 位作者2002-01-23Langmuir

The XPS (ESCA) method was employed to quantitatively determine polyelectrolyte adsorption on the mica basal plane from low ionic strength solutions. Particular emphasis was given to the effect of the polyelectrolyte charge density. By combining the results obtained from XPS and surface force measurements it was possib…

Force Microscopy Techniques and ApplicationsPolymer Surface Interaction StudiesAdvanced Fiber Optic Sensors

Reactions and Diffusion of Water and Oxygen Molecules in AmorphousSiO2

Tamas Bakos、Sergey N. Rashkeev、Sokrates T. Pantelides2002-01-23Physical Review Letters

Water and oxygen molecules determine many of the properties of amorphous SiO2 used in several technologies, but the underlying atomic-scale processes remain unresolved. We report results of first-principles calculations showing that a wide range of behavior is possible in an amorphous environment, including diffusion…

Photorefractive and Nonlinear OpticsGlass properties and applicationsLuminescence Properties of Advanced Materials

Long-range Effects on the Pyroelectric Coefficient of Ferroelectric Superlattice

Wen Dong、Dong-Lai Yao、Yin-Zhong Wu 等 4 位作者2002-01-23arXiv

Long-range effects on the pyroelectric coefficient of a ferroelectric superlattice consisting of two different ferroelectric materials are investigated based on the Transverse Ising Model. The effects of the interfacial coupling and the thickness of one period on the pyroelectric coefficient of the ferroelectric super…

Materials Science

Raman spectroscopy of dimethyl sulphoxide and deuterated dimethyl sulphoxide at 298 and 77 K

Wayde N. Martens、Ray L. Frost、János Kristóf 等 4 位作者2002-01-23Journal of Raman Spectroscopy

Abstract Raman spectroscopy was used to determine the molecular behaviour of DMSO and DMSO‐ d 6 , and to compare it with that of DMSO in DMSO‐intercalated kaolinites. For DMSO at 298 K two bands are observed at 2994 and 2913 cm −1 and are assigned to the antisymmetric and symmetric CH stretching modes. At 77 K the deg…

Clay minerals and soil interactionsGeochemistry and Geologic MappingGlass properties and applications

Effects of humidity on Young's modulus in poly(methyl methacrylate)

Chiemi Ishiyama、Yakichi Higo2002-01-23Journal of Polymer Science Part B Polymer Physics

Abstract Tensile tests on poly (methyl methacrylate) (PMMA) were conducted to clarify the effects of humidity and strain rate on tensile properties, particularly Young's modulus. Prior to the tensile tests, specimens were kept under various humidity conditions at 293 K, which were the same as the test conditions, for…

Polymer Nanocomposites and PropertiesPolymer Nanocomposite Synthesis and IrradiationPolymer crystallization and properties

Electric-field dependent spin diffusion and spin injection into semiconductors

Z. G. Yu、M. E. Flatte2002-01-23arXiv

We derive a drift-diffusion equation for spin polarization in semiconductors by consistently taking into account electric-field effects and nondegenerate electron statistics. We identify a high-field diffusive regime which has no analogue in metals. In this regime there are two distinct spin diffusion lengths. Further…

Materials Science

Atomistic Studies of Defect Nucleation during Nanoindentation of Au (001)

Anil Gannepalli、Surya K. Mallapragada2002-01-23arXiv

Atomistic studies are carried out to investigate the formation and evolution of defects during nanoindentation of a gold crystal. The results in this theoretical study complement the experimental investigations [J. D. Kiely and J. E. Houston, Phys. Rev. B, v57, 12588 (1998)] extremely well. The defects are produced by…

Materials Science

Mechanical detection of FMR spectrum in a normally magnetized YIG disk

V. Charbois、V. V. Naletov、J. Ben Youssef 等 4 位作者2002-01-23arXiv

The ferromagnetic resonance spectrum of a normally magnetized YIG disk, with thickness of 4.75$μ$m and radius of 80$μ$m, is measured at room temperature both by magnetic resonance force microscopy and by standard detection of the microwave susceptibility. The comparison indicates that MRFM represents one of the most p…

Materials Science

Chemical short range order obtained from the atomic pair distribution function

Th. Proffen、V. Petkov、S. J. L. Billinge 等 4 位作者2002-01-23arXiv

Many crystalline materials show chemical short range order and relaxation of neighboring atoms. Local structural information can be obtained by analyzing the atomic pair distribution function (PDF) obtained from powder diffraction data. In this paper, we present the successful extraction of chemical short range order…

Materials Science

Magnetophoresis of neutral particles in AC electric field

A. A. Ovchinnikov2002-01-23arXiv

It has been shown that under joint action of DC magnetic and AC electric fields neutral particles (atoms,molecules,nano-size particles etc.) nearby interface move with permanent velocity along the surface. The driving force depends on non-linear dynamical properties of polarization of the particles and a coupling betw…

cond-mat.stat-mechMaterials Science

Reduction of the glass transition temperature in polymer films: A molecular-dynamics study

Fathollah Varnik、J. Baschnagel、Kurt Binder2002-01-23Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics

We present results of molecular-dynamics simulations for a nonentangled polymer melt confined between two completely smooth and repulsive walls, interacting with inner particles via the potential U(wall)=(sigma/z)(9), where z=/z(particle)-z(wall) and sigma is (roughly) the monomer diameter. The influence of this confi…

Material Dynamics and PropertiesRheology and Fluid Dynamics StudiesTheoretical and Computational Physics

A simple route towards tubular ZnO

Jun Zhang、Ling‐Dong Sun、Chun‐Sheng Liao 等 4 位作者2002-01-23Chemical Communications

Thermal treatment of Zn(NH3)(4)2+ precursor in ethanol solvent led to the formation of the tubular ZnO which exhibited strong ultraviolet photoluminescence around 385 nm at room temperature; TEM images showed the hollow tubules with approximately 450 nm in diameter and approximately 4 microns in length were built up b…

ZnO doping and propertiesGa2O3 and related materialsLuminescence and Fluorescent Materials

Density Functional Theory of Adsorption in Spherical Cavities and Pore Size Characterization of Templated Nanoporous Silicas with Cubic and Three-Dimensional Hexagonal Structures

Peter I. Ravikovitch、Alexander V. Neimark2002-01-23OpenAlex

Adsorption in spherical cavities is studied by the nonlocal density functional theory (NLDFT). Theoretical results are compared with experimental data on ordered nanoporous materials with cubic Pm 3 n (SBA-1, HMM-3), cubic Im 3 m (SBA-16), and 3D hexagonal P 6 3 / mmc (SBA-2, SBA-12) cagelike structures. Quantitative…

Catalytic Processes in Materials ScienceZeolite Catalysis and SynthesisMesoporous Materials and Catalysis

Synthesis of nanoscale Fe-Ag alloy within thermally evaporated fatty acid films

Chinmay Damle、Kushan Biswas、Murali Sastry2002-01-22Nanotechnology

The low-temperature alloying of Fe-Ag nanoparticles entrapped within thermally evaporated fatty acid films by a novel ion exchange technique is described. Nanoparticles of iron and silver were grown in thermally evaporated stearic acid (StA) films by sequential immersion of the film in solutions containing Fe 2+ ions…

Polymer Surface Interaction StudiesCorrosion Behavior and InhibitionElectrodeposition and Electroless Coatings