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MATRAS: a program for protein 3D structure comparison

Takeshi Kawabata2003-06-25Nucleic Acids Research

The recent accumulation of large amounts of 3D structural data warrants a sensitive and automatic method to compare and classify these structures. We developed a web server for comparing protein 3D structures using the program Matras (http://biunit.aist-nara.ac.jp/matras). An advantage of Matras is its structure simil…

Protein Structure and DynamicsEnzyme Structure and FunctionGenomics and Phylogenetic Studies

Reversible, Band-Gap-Selective Protonation of Single-Walled Carbon Nanotubes in Solution

Michael S. Strano、Chad Huffman、Valerie C. Moore 等 12 位作者2003-06-25OpenAlex

In acidic solution between pH 6 and 2.5, protons react reversibly and selectively in the presence of preadsorbed oxygen at the sidewall of aqueous dispersed single-walled carbon nanotubes suspended in sodium dodecyl sulfate. This reactive complex, which protonates the nanotube sidewall, reversibly diminishes absorptio…

Electrochemical Analysis and ApplicationsElectrochemical sensors and biosensorsCarbon Nanotubes in Composites

Negative refractive index metamaterials supporting 2-D waves

Ashwin K. Iyer、George V. Eleftheriades2003-06-25OpenAlex

Recent demonstrations of negative refraction utilize three-dimensional collections of discrete periodic scatterers to synthesize artificial dielectrics with simultaneously negative permittivity and permeability. In this paper, it is shown that planar, two-dimensional L-C transmission line networks in a high pass confi…

Advanced Antenna and Metasurface TechnologiesMetamaterials and Metasurfaces ApplicationsAntenna Design and Analysis

Investigation into the Interaction between Surface-Bound Alkylamines and Gold Nanoparticles

Ashavani Kumar、Saikat Mandal、P. R. Selvakannan 等 6 位作者2003-06-25OpenAlex

In addition to alkanethiols and phosphine derivatives, alkylamines have been investigated as capping agents in the synthesis of organically dispersible gold nanoparticles. However, reports pertaining to gold nanoparticle derivatization with alkylamines are relatively scarce and their interaction with the underlying go…

Nanocluster Synthesis and ApplicationsQuantum Dots Synthesis And PropertiesGold and Silver Nanoparticles Synthesis and Applications

Application of the transmission line theory of left-handed (LH) materials to the realization of a microstrip "LH line"

Christophe Caloz、T. Itoh2003-06-25OpenAlex

Left-handed (LH) materials, first introduced theoretically in Veselago (1968), have spurred considerable excitement since the demonstration of their practical realizability. The unique properties of these metamaterials, verified by full-wave analysis in Caloz et al. (2001), are promising for a diversity of optical/mic…

Advanced Antenna and Metasurface TechnologiesAntenna Design and AnalysisMetamaterials and Metasurfaces Applications

Photoconductivity of Single Carbon Nanotubes

Marcus Freitag、Y. Martin、James A. Misewich 等 5 位作者2003-06-25OpenAlex

We observe infrared laser excited photoconductivity from a single carbon nanotube incorporated as the channel of an ambipolar field-effect transistor (FET). Electron−hole pairs are generated within the nanotube molecule, and the carriers are separated by an applied electric field between the source and drain contacts.…

Carbon Nanotubes in CompositesMechanical and Optical ResonatorsForce Microscopy Techniques and Applications

Graphite Oxide: Chemical Reduction to Graphite and Surface Modification with Primary Aliphatic Amines and Amino Acids

Athanasios B. Bourlinos、Dimitrios Gournis、Dimitris Petridis 等 6 位作者2003-06-25OpenAlex

The chemical reduction of graphite oxide (GO) to graphite by either NaBH 4 or hydroquinone and also its surface modification with neutral, primary aliphatic amines and amino acids are described. Treatment of GO with NaBH 4 leads to turbostatic graphite that upon calcination under an inert atmosphere is transformed to…

Fiber-reinforced polymer compositesGraphene research and applicationsAdvancements in Battery Materials

ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins

Patrice Gouet2003-06-25OpenAlex

The fortran program ESPript was created in 1993, to display on a PostScript figure multiple sequence alignments adorned with secondary structure elements. A web server was made available in 1999 and ESPript has been linked to three major web tools: ProDom which identifies protein domains, PredictProtein which predicts…

Genomics and Phylogenetic StudiesEnzyme Structure and FunctionGlycosylation and Glycoproteins Research

Lanthanide Double-Decker Complexes Functioning as Magnets at the Single-Molecular Level

Naoto Ishikawa、Miki Sugita、T. Ishikawa 等 5 位作者2003-06-25OpenAlex

Double-decker phthalocyanine complexes with Tb3+ or Dy3+ showed slow magnetization relaxation as a single-molecular property. The temperature ranges in which the behavior was observed were far higher than that of the transition-metal-cluster single-molecule magnets (SMMs). The significant temperature rise results from…

Magnetism in coordination complexesLanthanide and Transition Metal ComplexesPorphyrin and Phthalocyanine Chemistry

SWISS-MODEL: an automated protein homology-modeling server

Torsten Schwede2003-06-25OpenAlex

SWISS-MODEL (http://swissmodel.expasy.org) is a server for automated comparative modeling of three-dimensional (3D) protein structures. It pioneered the field of automated modeling starting in 1993 and is the most widely-used free web-based automated modeling facility today. In 2002 the server computed 120 000 user re…

Microbial Metabolic Engineering and BioproductionEnzyme Structure and FunctionProtein Structure and Dynamics

Hydrogen atom pairs in diamond bulk and at the surface: Hybrid density functional theory and cluster models

Alfred B. Anderson、Lubomir N. Kostadinov、John C. Angus2003-06-24Physical review. B, Condensed matter

Hydrogen pair defects in bulk diamond and on the (111) surface have been investigated using hybrid density functional theory and cluster models, including relaxation of defect atoms. The ${\mathrm{H}}_{2}^{*}$ defect, consisting of one hydrogen atom in a bond inserted (BI) site and the other in an adjacent ``antibondi…

Electronic and Structural Properties of OxidesDiamond and Carbon-based Materials ResearchHigh-pressure geophysics and materials

Order−Disorder Transitions and Magnetic Behaviour in Lithium Ferrites Li0.5+0.5xFe2.5−1.5xTixO4 (x = 1.28 and 1.50)

Marı́a Ángeles Arillo、Marı́a Luisa López、C. Pico 等 7 位作者2003-06-24European Journal of Inorganic Chemistry

Abstract We report the structural characterization and magnetic behaviour of the spinels with general formula Li 0.5+0.5 x Fe 2.5−1.5 x Ti x O 4 , where x = 1.28 and 1.50. When the samples are cooled slowly, a 1:3 crystallographic order occurs, whereas a random disorder is observed when the samples are quenched. Neutr…

Magnetic Properties and Synthesis of FerritesAdvancements in Battery MaterialsAdvanced Condensed Matter Physics

Signatures of Collective Local and Nanoscale Distortions in Diffraction Experiments

Ángel J. García-Adeva、Dylan R. Conradson、P. Villella 等 4 位作者2003-06-24The Journal of Physical Chemistry B

The effects of periodic and aperiodic distortions on the structure factor and radial distribution function of single-component lattices are investigated. To this end, different kinds of distortions are applied to the otherwise perfect square lattice and the corresponding radial distribution function and structure fact…

X-ray Diffraction in CrystallographySolid-state spectroscopy and crystallographyMultiferroics and related materials

Effective Recovery of Nd–Fe–B Sintered Magnet Scrap Powders as Isotropic Bonded Magnets

Ken‐ichi Machida、Masahiro Masuda、Shunji Suzuki 等 5 位作者2003-06-24Chemistry Letters

Abstract Nd–Fe–B sintered magnet scrap powders, viz. “sludge”, as produced in the sizing and polishing processes for well-shaped magnets of small-sized motors and other equipments were effectively recovered as the raw powders for isotropic Nd–Fe–B bonded magnets (Br = 0.66 T, Hcj = 0.92 MA/m, and (BH)max = 70 kJ/m3) b…

Superconducting Materials and ApplicationsMagnetic Properties of AlloysRare-earth and actinide compounds

Nanofibers of 1,3‐Diphenyl‐2‐pyrazoline Induced by Cetyltrimethylammonium Bromide Micelles

Hongbing Fu、Debao Xiao、Jiannian Yao 等 4 位作者2003-06-24Angewandte Chemie

Nach einem Templat-induzierten Mechanismus bilden sich Nanofasern aus 1,3-Diphenyl-2-pyrazolin (DP) in wässriger Phase in Gegenwart von Cetyltrimethylammoniumbromid (CTAB). Die oberflächenaktiven CTAB-Moleküle dienen hierbei nicht nur als Kolloid-Stabilisatoren, denn auch die stäbchenförmigen CTAB-Micellen, die sich a…

Porphyrin and Phthalocyanine ChemistryLuminescence and Fluorescent MaterialsSupramolecular Self-Assembly in Materials

Syntheses of Biphenyl Polyimides via Nickel-Catalyzed Coupling Polymerization of Bis(chlorophthalimide)s

Changlu Gao、Suobo Zhang、Lianxun Gao 等 4 位作者2003-06-24Macromolecules

A facile method for the synthesis of biphenyl polyimides, which involves the nickel-catalyzed coupling of aromatic dichlorides containing imide structure in the presence of zinc and triphenylphosphine, has been developed. The polymerizations proceeded smoothly under mild conditions and produced biphenyl polyimides wit…

Synthesis and properties of polymersSynthesis and pharmacology of benzodiazepine derivativesSynthetic Organic Chemistry Methods

Crystal structure of a phosphatase with a unique substrate binding domain from Thermotoga maritima

Dong Hae Shin、Anne Roberts、Jaru Jancarik 等 7 位作者2003-06-24Protein Science

We have determined the crystal structure of a phosphatase with a unique substrate binding domain from Thermotoga maritima, TM0651 (gi 4981173), at 2.2 A resolution by selenomethionine single-wavelength anomalous diffraction (SAD) techniques. TM0651 is a member of the haloacid dehalogenase (HAD) superfamily, with seque…

Enzyme Structure and FunctionBiochemical Acid Research StudiesBiochemical and Molecular Research

Picosecond Time-Resolved Stokes and Anti-Stokes Raman Studies on the Photochromic Reactions of Diarylethene Derivatives

Chie Okabe、Takakazu Nakabayashi、Nobuyuki Nishi 等 7 位作者2003-06-24The Journal of Physical Chemistry A

The cyclization and cycloreversion reactions of diarylethene derivatives have been studied with picosecond time-resolved Stokes and anti-Stokes Raman spectroscopies. The cyclization reaction of 1,2-bis(2,5-dimethyl-3-thienyl)perfluorocyclopentene (DMTF) is found to occur within 4 ps to produce the vibrationally excite…

Photochromic and Fluorescence ChemistryOlfactory and Sensory Function StudiesPhotoreceptor and optogenetics research

Spirodiporphyrine – als zweikernige Metallkomplexe

Emanuel Vogel、Martin Michels、Lars Zander 等 6 位作者2003-06-24Angewandte Chemie

Die überraschende Bildung des ersten Spirodiporphyrins in Form eines Metallkomplexes, des Spirodicorrol-Dinickelkomplexes 1, ist ein Ergebnis der vielseitigen Chemie des „Figure-Eight“-Cyclooctapyrrols Octaphyrin-(1.1.1.0.1.1.1.0). Die Umwandlung des Cyclooctapyrrols in 1 beruht auf einer Folge von Oxidation und einer…

Metal-Catalyzed Oxygenation MechanismsMagnetism in coordination complexesPorphyrin and Phthalocyanine Chemistry

Binary Interactions of Poly(Ethylene Covinyl Alcohol) with Poly(4-Vinyl Pyridine) and Poly(n-Butyl Methacrylate)

Sevgul Keskin、J. Richard Elliott2003-06-24Industrial & Engineering Chemistry Research

The effect of hydrogen bonding on the phase behavior of binary polymer blends of poly(ethylene covinyl alcohol) (EVOH) with poly( n -butyl methacrylate) (PBMA) and poly(4-vinyl pyridine) (PVPy) was studied by Fourier transform infrared spectroscopy-attenuated total reflectance (FTIR/ATR). The association model of Pain…

Polymer Science and PVCEnvironmental Impact and SustainabilityPhase Equilibria and Thermodynamics