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The Catalytic Mechanism of Protein Phosphatase 5 Established by DFT Calculations

António J. M. Ribeiro、Marta E. Alberto、Maria J. Ramos 等 5 位作者2013-09-06Chemistry - A European Journal

In order to elucidate the catalytic mechanism of the Mn-Mn containing serine/threonine protein phosphatase 5 (PP5), we present a density functional theory study with a cluster model approach. According to our results, the reaction occurs through an in-line concerted transition state with an energy of 15.8 kcal mol(-1)…

Protein Structure and DynamicsEnzyme Structure and FunctionMetalloenzymes and iron-sulfur proteins

Site-Specific Scaling Relations for Hydrocarbon Adsorption on Hexagonal Transition Metal Surfaces

M. M. Montemore、J. Will Medlin2013-09-06The Journal of Physical Chemistry C

Screening a large number of surfaces for their catalytic performance remains a challenge, leading to the need for simple models to predict adsorption properties. To facilitate rapid prediction of hydrocarbon adsorption energies, scaling relations that allow for calculation of the adsorption energy of any intermediate…

Advanced Chemical Physics StudiesCatalytic Processes in Materials ScienceCatalysis and Oxidation Reactions

Nonthermal ablation with microbubble-enhanced focused ultrasound close to the optic tract without affecting nerve function

Nathan McDannold、Yongzhi Zhang、Chanikarn Power 等 5 位作者2013-09-06Journal of neurosurgery

OBJECT: Tumors at the skull base are challenging for both resection and radiosurgery given the presence of critical adjacent structures, such as cranial nerves, blood vessels, and brainstem. Magnetic resonance imaging-guided thermal ablation via laser or other methods has been evaluated as a minimally invasive alterna…

Ultrasound and Hyperthermia ApplicationsUltrasound and Cavitation PhenomenaPhotoacoustic and Ultrasonic Imaging

A coarse grain model for protein-surface interactions

Shuai Wei、Thomas A. Knotts2013-09-06The Journal of Chemical Physics

The interaction of proteins with surfaces is important in numerous applications in many fields-such as biotechnology, proteomics, sensors, and medicine--but fundamental understanding of how protein stability and structure are affected by surfaces remains incomplete. Over the last several years, molecular simulation us…

Polymer Surface Interaction StudiesMonoclonal and Polyclonal Antibodies ResearchAdvanced Biosensing Techniques and Applications

A remarkable spectral feature of the Schrödinger Hamiltonian of the harmonic oscillator perturbed by an attractive δ′-interaction centred at the origin: double degeneracy and level crossing

Sergio Albeverio、S. Fassari、F. Rinaldi2013-09-06Journal of Physics A Mathematical and Theoretical

We rigorously define the self-adjoint Hamiltonian of the harmonic oscillator perturbed by an attractive δ'-interaction, of strength β, centred at 0 (the bottom of the confining parabolic potential), by explicitly providing its resolvent. Our approach is based on a 'coupling constant renormalization', related to a tech…

Magnetism in coordination complexesSpectral Theory in Mathematical PhysicsQuantum chaos and dynamical systems

Particle on a Boron Disk: Ring Currents and Disk Aromaticity in B202–

Truong Ba Tai、Remco W. A. Havenith、Jos L. Teunissen 等 7 位作者2013-09-06Inorganic Chemistry

The B20(2-) cluster is predicted to exhibit a planar sheet-like structure with a circular circumference. Orbital plots and energy correlations demonstrate the close correspondence between the electronic structure of B20(2-) and the Bessel functions describing the waves of a quantum mechanical particle confined to a di…

Boron and Carbon Nanomaterials ResearchOrganoboron and organosilicon chemistryBoron Compounds in Chemistry

Comprehensive Signal Assignment of 13C-Labeled Lignocellulose Using Multidimensional Solution NMR and 13C Chemical Shift Comparison with Solid-State NMR

Takanori Komatsu、Jun Kikuchi2013-09-06Analytical Chemistry

A multidimensional solution NMR method has been developed using various pulse programs including HCCH-COSY and (13)C-HSQC-NOESY for the structural characterization of commercially available (13)C labeled lignocellulose from potatoes (Solanum tuberosum L.), chicory (Cichorium intybus), and corn (Zea mays). This new met…

Advanced Cellulose Research StudiesPolysaccharides and Plant Cell WallsLignin and Wood Chemistry

Blue luminescence and Zn acceptor in GaN

D. O. Demchenko、M. A. Reshchikov2013-09-06Physical Review B

In this paper, we present a comparison of exchange-tuned hybrid density functional calculations with experimental data obtained for the Zn acceptor in GaN. Since this acceptor is one of the few reliably identified defects in GaN, we use Zn-doped GaN as a test case for the widely used HSE06 hybrid functional method of…

ZnO doping and propertiesGaN-based semiconductor devices and materialsGa2O3 and related materials

Dithienylbenzodipyrrolidone: New Acceptor for Donor–Acceptor Low Band Gap Polymers

Weibin Cui、Fred Wudl2013-09-06Macromolecules

An analogue of DPP, dithienylbenzodipyrrolidone (DTBDPD), was successfully synthesized. Several D–A copolymers, with different electron donating capability donor unit (fluorene, difluorene, dithienosilole, and dithienopyrrole) and DTBDPD acceptor, were prepared by means of Suzuki and Stille coupling reaction. The opti…

Organic Electronics and PhotovoltaicsOrganic Light-Emitting Diodes ResearchConducting polymers and applications

Tuning the Fermi Level and the Kinetics of Surface States of TiO 2 Nanorods by Means of Ammonia Treatments

Cristian Fàbrega、Damián Monllor‐Satoca、Santiago Ampudia 等 6 位作者2013-09-06The Journal of Physical Chemistry C

Ammonia-induced reduction treatment of titanium dioxide rutile nanorods has been performed, where the treatment triggered a synergistic surface modification of titania electrodes that enhanced its overall photoelectrochemical performance, besides introducing a new absorption band in the 420–480 nm range. A physical mo…

TiO2 Photocatalysis and Solar CellsAdvanced Photocatalysis TechniquesCopper-based nanomaterials and applications

Protein Similarity Networks Reveal Relationships among Sequence, Structure, and Function within the Cupin Superfamily

Richard Uberto、Ellen W. Moomaw2013-09-06PLoS ONE

The cupin superfamily is extremely diverse and includes catalytically inactive seed storage proteins, sugar-binding metal-independent epimerases, and metal-dependent enzymes possessing dioxygenase, decarboxylase, and other activities. Although numerous proteins of this superfamily have been structurally characterized,…

Protein Structure and DynamicsMicrobial Metabolic Engineering and BioproductionEnzyme Structure and Function

Rutile Crystallites Isolated from Degussa (Evonik) P25 TiO2: Highly Efficient Photocatalyst for Chemoselective Hydrogenation of Nitroaromatics

Yasuhiro Shiraishi、Hiroaki Hirakawa、Yoshiki Togawa 等 6 位作者2013-09-06ACS Catalysis

We report that the rutile crystallites, isolated from Degussa (Evonik) P25 TiO 2 by a hydrofluoric acid treatment, behave as a highly efficient photocatalyst for hydrogenation of nitroaromatics. Photoirradiation (λ >300 nm) of the isolated rutile particles with alcohol as a hydrogen source successfully promotes chemos…

Advanced Photocatalysis TechniquesCopper-based nanomaterials and applicationsNanomaterials for catalytic reactions

Structure and Catalytic Performance of Mg‐SBA‐15‐Supported Nickel Catalysts for CO 2 Reforming of Methane to Syngas

Haosheng Zhang、M. Li、Pufu Xiao 等 5 位作者2013-09-06Chemical Engineering & Technology

Abstract A series of Mg‐modified SBA‐15 mesoporous silicas with different MgO contents were successfully synthesized by a simple one‐pot synthesis method and further impregnated with Ni. The Mg‐modified SBA‐15 materials and supported Ni catalysts were characterized by N 2 physisorption (BET), X‐ray diffraction (XRD),…

Catalytic Processes in Materials ScienceCatalysts for Methane ReformingMesoporous Materials and Catalysis

Surface activation of graphene oxide nanosheets by ultraviolet irradiation for highly efficient anti-bacterials

Murugan Veerapandian、Linghe Zhang、Karthikeyan Krishnamoorthy 等 4 位作者2013-09-06Nanotechnology

A comprehensive investigation of anti-bacterial properties of graphene oxide (GO) and ultraviolet (UV) irradiated GO nanosheets was carried out. Microscopic characterization revealed that the GO nanosheet-like structures had wavy features and wrinkles or thin grooves. Fundamental surface chemical states of GO nanoshee…

Nanoparticles: synthesis and applicationsGraphene research and applicationsGraphene and Nanomaterials Applications

Helium focused ion beam fabricated plasmonic antennas with sub-5 nm gaps

Olivier Scholder、Konstantins Jefimovs、Ivan Shorubalko 等 6 位作者2013-09-06Nanotechnology

We demonstrate a reliable fabrication method to produce plasmonic dipole nanoantennas with gap values in the range of 3.5-20 nm. The method combines electron beam lithography to create gold nanorods and helium focused ion beam milling to cut the gaps. Results show a reproducibility within 1 nm. Scattering spectra of a…

Gold and Silver Nanoparticles Synthesis and ApplicationsMetamaterials and Metasurfaces ApplicationsPlasmonic and Surface Plasmon Research

On the Calculation of Solid-Fluid Contact Angles from Molecular Dynamics

Erik E. Santiso、Carmelo Herdes、Erich A. Müller2013-09-06Entropy

A methodology for the determination of the solid-fluid contact angle, to be employed within molecular dynamics (MD) simulations, is developed and systematically applied. The calculation of the contact angle of a fluid drop on a given surface, averaged over an equilibrated MD trajectory, is divided in three main steps:…

Surface Modification and SuperhydrophobicityTheoretical and Computational Physicsnanoparticles nucleation surface interactions

DIELECTRIC FUNCTION, FRIEDEL OSCILLATION AND PLASMONS IN WEYL SEMIMETALS

Min Lv、Shou-Cheng Zhang2013-09-06International Journal of Modern Physics B

We calculate the dielectric function of a Weyl semimetal at arbitrary momentum q and frequency ω within the random-phase approximation. Taking the static limit, we calculated the Friedel oscillation and found that: (1) For a single Weyl point, the oscillation ~ sin (2kFr)/r4 falls off faster by an 1/r factor than the…

Graphene research and applications2D Materials and ApplicationsTopological Materials and Phenomena

Three Distinct Equilibrium States via Self-Assembly: Simple Access to a Supramolecular Ion-Controlled NAND Logic Gate

Dong Sub Kim、Vincent M. Lynch、Jung Su Park 等 4 位作者2013-09-06Journal of the American Chemical Society

During the past several decades, considerable effort has focused on self-assembled systems. However, most work has been directed toward understanding the equilibrium between two major chemical entities, namely the dissociated components and the corresponding associated complex. While there are quite a few examples of…

Molecular Sensors and Ion DetectionSupramolecular Chemistry and ComplexesLuminescence and Fluorescent Materials

Ion-Based Materials Derived from Positively and Negatively Charged Chloride Complexes of π-Conjugated Molecules

Bin Dong、Tsuneaki Sakurai、Yuya Bando 等 8 位作者2013-09-06Journal of the American Chemical Society

Oriented salts from planar charged species were prepared by combining positively and negatively charged receptor-anion complexes with similar geometries using dicationic and electronically neutral π-conjugated receptors. Phenylene- or pyrimidine-bridged bis(imidazolium) dicationic anion receptors formed monocationic r…

Molecular Sensors and Ion DetectionLuminescence and Fluorescent MaterialsPolydiacetylene-based materials and applications

Extended Investigations on Luminescent Cs2[Mo6Br14]@SiO2 Nanoparticles: Physico-Structural Characterizations and Toxicity Studies

Tangi Aubert、Francisco Cabello‐Hurtado、Marie-Andrée Esnault 等 15 位作者2013-09-06The Journal of Physical Chemistry C

Functional silica nanoparticles and in particular luminescent silica nanoparticles constitute very promising candidates for many applications in the field of biotechnology, theranostics, and photonics. However, optimizing the design of such materials requires a deep understanding of their physicochemical properties. I…

MXene and MAX Phase MaterialsNanocluster Synthesis and ApplicationsInorganic Chemistry and Materials