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Modeling of loops in proteins: a multi-method approach

Michał H. Jamróz、Andrzej Koliński2010-01-01BMC Structural Biology

BACKGROUND: Template-target sequence alignment and loop modeling are key components of protein comparative modeling. Short loops can be predicted with high accuracy using structural fragments from other, not necessairly homologous proteins, or by various minimization methods. For longer loops multiscale approaches emp…

Protein Structure and DynamicsProtein purification and stabilityEnzyme Structure and Function

Importance of Myxomycetes in Biological Research and Teaching

Harold W. Keller、Sydney E. Everhart2010-01-01Lincoln (University of Nebraska)

Myxomycetes, the true slime molds, are highlighted in research and teaching that emphasizes various stages of the life cycle as experimental models. Past and current phylogenetic classifications of Myxomycetes on the tree of life are presented. Life cycle stages are illustrated, described, and discussed. Simple labora…

Diatoms and Algae ResearchBiocrusts and Microbial EcologySlime Mold and Myxomycetes Research

Hydroxyalkylation of [60]fullerene: free radical addition of alcohols to C60

Manolis D. Tzirakis、M. N. Alberti、Michael Orfanopoulos2010-01-01Chemical Communications

A new general reaction for the preparation of isomerically pure hydroxyalkylated C(60) monoadducts, via the free radical photochemical addition of alcohols to [60]fullerene, is described.

Carbon Nanotubes in CompositesGraphene research and applicationsFullerene Chemistry and Applications

Probing the local structures and protonic conduction pathways in scandium substituted BaZrO3 by multinuclear solid-state NMR spectroscopy

Lucienne Buannic、Frédéric Blanc、Ivan Hung 等 5 位作者2010-01-01Journal of Materials Chemistry

A comprehensive multinuclear solid-state NMR study of scandium-substituted BaZrO3 is reported. Static low field and MQMAS very high field 45Sc NMR data revealed the presence of both 5- and 6-coordinated scandium atoms, 5-coordinated scandium arising from Sc nearby an oxygen vacancy. 17O NMR spectra showed the presence…

Advanced Condensed Matter PhysicsAdvanced NMR Techniques and ApplicationsSolid-state spectroscopy and crystallography

Fabrication Insensitive Echelle Grating in Silicon on Insulator Platform

D. Feng、Wei Qian、Hong Liang 等 7 位作者2010-01-01IEEE Photonics Technology Letters

We demonstrate a compact, low crosstalk, low loss, and flat passband demultiplexer based on an echelle grating fabricated in the silicon-on-insulator (SOI) platform. The demonstrated 12 channel demultiplexer has an 8-nm channel spacing, 5.5-nm flat passband, 1.7-dB on-chip loss, and better than 25-dB optical crosstalk…

Photonic and Optical DevicesPhotonic Crystals and ApplicationsOptical Coatings and Gratings

Morphological, structural, microhardness and corrosion characterisations of electrodeposited Ni-Mo and Cr coatings

Pedro de Lima‐Neto、Adriana N. Correia、Gustavo L. Vaz 等 4 位作者2010-01-01Journal of the Brazilian Chemical Society

The corrosion resistance of electrodeposited Cr and Ni-Mo coatings and the influence of heat treatment on the crystallographic structure, morphology and microhardness properties were investigated here. The characterisations were carried out using scanning electron microscopy (SEM), X-ray diffraction (XRD) and energy d…

Corrosion Behavior and InhibitionElectrodeposition and Electroless CoatingsSemiconductor materials and interfaces

Bioactivity of Rumex obtusifolius (Polygonaceae)

Diane Harshaw、Lutfun Nahar、Brahmachari Vadla 等 5 位作者2010-01-01Archives of Biological Sciences

Rumex obtusifolius L. (Polygonaceae), commonly known as 'broad-leaf dock', is one of the most common Irish wayside weeds, and it also occurs in silage fields, on river banks, in ditches and on waste grounds. The ethnobotanical uses of this species include its use as an antidote to nettle, depurative, astringent, laxat…

Essential Oils and Antimicrobial ActivityPhytochemistry and biological activity of medicinal plantsPhytochemistry and Bioactive Compounds

Catalytically active self-assembled silica-based nanostructures containing supported nanoparticles

Camino González‐Arellano、Alina M. Balu、Rafael Luque 等 4 位作者2010-01-01Green Chemistry

Self-assembled tubular silica-based nanostructures can be prepared using a simple, low-energy intensive and benign protocol under mild conditions (<100 °C) using microwave irradiation and conventional heating. These nanotubes were found to contain metal nanoparticles that are catalytically active in the microwave-assi…

Catalytic Processes in Materials ScienceMesoporous Materials and CatalysisMolecular Junctions and Nanostructures

Fullerol ionic fluids

Nikhil Fernandes、Panagiotis Dallas、Robert Rodriguez 等 6 位作者2010-01-01Nanoscale

We report for the first time an ionic fluid based on hydroxylated fullerenes (fullerols). The ionic fluid was synthesized by neutralizing the fully protonated fullerol with an amine terminated polyethylene/polypropylene oxide oligomer (Jeffamine). The ionic fluid was compared to a control synthesized by mixing the par…

Carbon Nanotubes in CompositesDiamond and Carbon-based Materials ResearchFullerene Chemistry and Applications

Dilute Acid Pretreatment of Bamboo for Fermentable Sugar Production

W. Leenakul、Nakorn Tippayawong2010-01-01OpenAlex

Abstract: Biochemical conversion of lignocellulosic biomass to ethanol provides a sustainable energy production system. Bamboo is a fast growing woody grass that has great potential to be used as a domestic feedstock for fuel ethanol production. It consists of about 40 % cellulose, and 27 % hemicelluloses. In this inv…

Biofuel production and bioconversionAdvanced Cellulose Research StudiesMicrobial Metabolic Engineering and Bioproduction

Construction of [Ag2X2]-based complexes from reactions of Ag(i) salts with N-diphenylphosphanylmethyl-4-aminopyridine: isolation, structures, and luminescent properties

Ni-Ya Li、Zhi‐Gang Ren、Dong Liu 等 8 位作者2010-01-01Dalton Transactions

Reactions of N-diphenylphosphanylmethyl-4-aminopyridine (dppmapy) with K[Ag(CN)(2)], Ag(dca) (dca = dicyanamide), AgSCN, AgCl, AgBr or AgI gave rise to six [Ag(2)X(2)]-based (X = CN(-), dca, SCN(-), Cl(-), Br(-) and I(-)) compounds, [{Ag(2)(CN)(2)(dppmapy)}.0.5CHCl(3)](n) (1), [Ag(2)L(2)(dppmapy)(2)](n) (2: L = dca; 3…

Metal-Organic Frameworks: Synthesis and ApplicationsMetal complexes synthesis and propertiesMagnetism in coordination complexes

Antimicrobial activity of spherical silver nanoparticles prepared using a biocompatible macromolecular capping agent: evidence for induction of a greatly prolonged bacterial lag phase

Peter L. Irwin、Justin J. Martin、Ly-Huong T. Nguyen 等 6 位作者2010-01-01Journal of Nanobiotechnology

BACKGROUND: We have evaluated the antimicrobial properties of Ag-based nanoparticles (Nps) using two solid phase bioassays and found that 10-20 μL of 0.3-3 μM keratin-stabilized Nps (depending on the starting bacterial concentration = CI) completely inhibited the growth of an equivalent volume of ca. 103 to 104 colony…

Nanoparticles: synthesis and applicationsWound Healing and TreatmentsDyeing and Modifying Textile Fibers

Exploratory Investigation of Nanomaterials to Improve Strength and Permeability of Concrete

Celik Ozyildirim、Caroline Zegetosky2010-01-01Transportation Research Record Journal of the Transportation Research Board

Concrete containing various supplementary cementitious materials (SCMs) such as silica fume, fly ash, and slag has improved properties. Nanomaterials, new SCMs with possible applications in concrete, have the smallest particle size (less than 100 nm). Nanomaterials are reactive because of the small size and large surf…

Concrete and Cement Materials ResearchInnovative concrete reinforcement materialsMagnesium Oxide Properties and Applications

A Dynamic Voltage Restorer for Voltage Sag Mitigation in a Refinery with Induction Motors Loads

Tarek El-Shennawy2010-01-01American Journal of Engineering and Applied Sciences

Problem statement: ANRPC is a refinery based in Alexandria, Egypt.The plant was subjected to several shutdowns due to tripping of large induction motors, either by under voltage or by over current relays, sometimes by the mechanical protection.The main cause for such unplanned shutdowns was voltage sags.The Dynamic Vo…

Power Quality and HarmonicsMagnetic Properties and ApplicationsPower Transformer Diagnostics and Insulation

Reverse micelles from amphiphilic branched polymers

Marie‐Christine Jones、Jean‐Christophe Leroux2010-01-01Soft Matter

It is well established that micellar structures can form in non-aqueous solutions. The resulting nanostructures, commonly referred to as ‘reverse micelles’, are characterized by a polar core and hydrophobic shell. Such micelles have typically been generated from hydrophobically-modified polar branched polymers and eva…

Advanced Polymer Synthesis and CharacterizationSurfactants and Colloidal SystemsDendrimers and Hyperbranched Polymers

Combined Effect of Pre-Straining and Pre-Aging on Bake-Hardening Behavior of an Al-0.6 mass%Mg-1.0 mass%Si Alloy

Tetsuya Masuda、Yasuo Takaki、Takeo Sakurai 等 4 位作者2010-01-01MATERIALS TRANSACTIONS

The effect of pre-straining in combination with pre-aging on bake-hardening behavior of an Al-0.6 mass%Mg-1.0 mass%Si alloy was investigated by means of Vickers hardness test, electrical conductivity measurement, differential scanning calorimetry (DSC) and transmission electron microscopy (TEM). Hardness change and DS…

Magnesium Alloys: Properties and ApplicationsAluminum Alloy Microstructure PropertiesAluminum Alloys Composites Properties

Derivation of the Wenzel and Cassie Equations from a Phase Field Model for Two Phase Flow on Rough Surface

Xianmin Xu、Xiaoping Wang2010-01-01SIAM Journal on Applied Mathematics

In this paper, the equilibrium behavior of an immiscible two phase fluid on a rough surface is studied from a phase field equation derived from minimizing the total free energy of the system. When the size of the roughness becomes small, we derive the effective boundary condition for the equation by the multiple scale…

Solidification and crystal growth phenomenaAdvanced Mathematical Modeling in EngineeringFluid Dynamics and Thin Films

A feasibly synthesized ladder-type conjugated molecule as the novel high mobility n-type organic semiconductor

Hongkun Tian、Yunfeng Deng、Feng Pan 等 7 位作者2010-01-01Journal of Materials Chemistry

Two ladder-type conjugated molecules, i.e., 2,2′-(2,7-dihexyl-4,9-dihydro-s-indaceno[1,2-b:5,6-b′]dithiophene-4,9-diylidene) dimalononitrile (1) and 2,7-dihexyl-4,9-dihydro-s-indaceno[1,2-b:5,6-b′]dithiophene-4,9-dione (2) were synthesized in high yields, and their electrochemical properties, single crystal structures…

Organic Electronics and PhotovoltaicsConducting polymers and applicationsOrganic and Molecular Conductors Research

Liposomal squalenoyl-gemcitabine: formulation, characterization and anticancer activity evaluation

Barbara Pili、L. Harivardhan Reddy、Claudie Bourgaux 等 6 位作者2010-01-01Nanoscale

A new prodrug of gemcitabine, based on the covalent coupling of squalene to gemcitabine (GemSQ), has been designed to enhance the anticancer activity of gemcitabine, a nucleoside analogue active against a wide variety of tumors. In the present study, the feasibility of encapsulating GemSQ into liposomes either PEGylat…

Nanoparticle-Based Drug DeliveryAdvanced biosensing and bioanalysis techniquesRNA Interference and Gene Delivery

Orientation Relationship in Fcc–Bcc Phase Transformation Kinetics of Iron: a Molecular Dynamics Study

Shinji Tateyama、Yasushi Shibuta、Toshio Suzuki2010-01-01ISIJ International

The kinetics of the (110)bcc//(111)fcc heterointerface of iron during the fcc–bcc phase transformation has been investigated by molecular dynamics simulation. The various orientation relationships (ORs) between Nishiyama–Wasserman (N–W) and Kurdjumow–Sachs (K–S) ORs, which are experimentally observed, were examined. T…

Microstructure and mechanical propertiesMicrostructure and Mechanical Properties of SteelsFusion materials and technologies