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The tryptophan pathway genes of the Sargasso Sea metagenome: new operon structures and the prevalence of non-operon organization

Juliana Kagan、Itai Sharon、Oded Béjà 等 4 位作者2008-01-27Genome biology

BACKGROUND: The enormous database of microbial DNA generated from the Sargasso Sea metagenome provides a unique opportunity to locate genes participating in different biosynthetic pathways and to attempt to understand the relationship and evolution of those genes. In this article, an analysis of the Sargasso Sea metag…

Microbial Natural Products and BiosynthesisEnzyme Structure and FunctionMicrobial metabolism and enzyme function

Dependence of electronic and optical properties on a high-frequency field for carbon nanotubes

Wenhu Liao、Guanghui Zhou、Kai-He Ding2008-01-27arXiv

We study theoretically the electronic structure, transport and optical properties for a zigzag single-wall carbon nanotube connected to two normal conductor leads under the irradiation of an external electromagnetic field at low temperatures, with particular emphasis on the features of high-frequency response. Using t…

Mesoscale and Nanoscale PhysicsMaterials Science

Acid Autocatalysis and Front Propagation in Water-in-Oil Microemulsions

Rachel E. McIlwaine、Hayley Fenton、Stephen K. Scott 等 4 位作者2008-01-26The Journal of Physical Chemistry C

Experimental results are presented of an acid autocatalytic reaction (the bromate-sulfite clock reaction) performed in water-in-oil (w/o) microemulsions with neutral (Triton X-100, TX) or cationic (CTAB) surfactants. The characteristics of the pH-sensitive reaction in the stirred system are found to depend on the mola…

Surfactants and Colloidal SystemsPorphyrin and Phthalocyanine ChemistryPhotochemistry and Electron Transfer Studies

Relax with TEMPO: A Paramagnetic Relaxation Agent Useful also for Silicon-29 NMR Spectroscopy

Stefan Spirk、Tobias Madl、Rudolf Pietschnig2008-01-26Organometallics

TEMPO enhances longitudinal relaxation rates of silicon compounds significantly (e.g., enhancement by a factor of 150 for Si(OEt) 4 ) while tolerating a wide range of reactive functionalities making it a favorable alternative to other relaxation enhancers for 29 Si NMR spectroscopy.

Lanthanide and Transition Metal ComplexesAdvanced NMR Techniques and ApplicationsElectron Spin Resonance Studies

Electrochemical Synthesis, Structural Characterization, and Decomposition of Rhenium Oxoethoxide, Re4O4(OEt)12. Ligand Influence on the Structure and Bonding in the High-Valent Tetranuclear Planar Rhenium Alkoxide Clusters

Olesya A. Nikonova、Kjell Jansson、Vadim G. Kessler 等 8 位作者2008-01-26Inorganic Chemistry

Anodic oxidation of rhenium in ethanol in the presence of LiCl as a conductive additive results with high yield in formation of a new oxoethoxide cluster, Re(4)O(4)(OEt)(12). The structure of the planar centrosymmetric metal-oxygen core of this molecule is composed of four edge-sharing Re(V)O(6) octahedra. Eight elect…

Organometallic Complex Synthesis and CatalysisPolyoxometalates: Synthesis and ApplicationsInorganic Chemistry and Materials

Square Grains in Asymmetric Rod−Coil Block Copolymers

Bradley D. Olsen、Michael F. Toney、Rachel A. Segalman2008-01-26Langmuir

Unlike the rounded grains that are well known to form in most soft materials, square grains of microphase-separated lamellae are observed in thin films of a rod-coil block copolymer because of hierarchical structuring originating from the molecular packing of the rods. The square grains are oriented with lamellar laye…

Advanced Polymer Synthesis and CharacterizationPolymer Surface Interaction StudiesBlock Copolymer Self-Assembly

Novel Monofunctional Histidinol-Phosphate Phosphatase of the DDDD Superfamily of Phosphohydrolases

Hyun Sook Lee、Yona Cho、Jung-Hyun Lee 等 4 位作者2008-01-26Journal of Bacteriology

The TON_0887 gene was identified as the missing histidinol-phosphate phosphatase (HolPase) in the hyperthermophilic archaeon "Thermococcus onnurineus" NA1. The protein contained conserved motifs of the DDDD superfamily of phosphohydrolase, and the recombinantly expressed protein exhibited strong HolPase activity. In t…

Enzyme Structure and FunctionMachine Learning in BioinformaticsBiochemical and Molecular Research

Structural and Electronic Characteristics of Perhydrogenated Boron Nitride Nanotubes

Jukka T. Tanskanen、Mikko Linnolahti、Antti J. Karttunen 等 4 位作者2008-01-26The Journal of Physical Chemistry C

The structural and electronic characteristics of fully hydrogenated boron nitride nanotubes have been determined by quantum chemical methods. Single-walled nanotubes up to and over 10 nm in diameter have been fully optimized by periodic B3LYP calculations, made possible by utilization of line group symmetries. The pre…

Graphene research and applicationsBoron and Carbon Nanomaterials ResearchMXene and MAX Phase Materials

Synthesis and Crystal Structure of Thorium Bis(hydrogenphosphate) Monohydrate

Miguel Á. Salvadó、Pilar Pertierra、G.R. Castro 等 5 位作者2008-01-26Inorganic Chemistry

Microcrystals of Th(HPO 4) 2.H 2O were hydrothermally obtained from a Th(NO 3) 4-CO(NH 2) 2-H 3PO 3-H 2O system ( T = 180 masculineC). The structure [orthorhombic, Pbca, a = 9.1968(2) A, b = 18.6382(2) A, c = 8.7871(2) A], unlike alpha-Zr(HPO 4) 2.H 2O-type layered compounds, consists of a three-dimensional framework…

Radioactive element chemistry and processingNuclear materials and radiation effectsChemical Synthesis and Characterization

Coordination Structure Changes of Linear Cobalt(II) Triazole Complexes Induced by Binding of Long-chained Alcohols: Adaptive Molecular Clefts

Keita Kuroiwa、Nobuo Kimizuka2008-01-26Chemistry Letters

Abstract Lipophilic, linear cobalt(II) triazole complex Co(1)3Cl2 in chloroform shows sol-to-gel transition upon addition of long-chained alcohols. Binding of alcohol molecules induces coordination structure changes (octahedral, Oh to tetrahedral, Td), which promotes aggregation of nanofibers and concomitant physical…

Metal-Organic Frameworks: Synthesis and ApplicationsSupramolecular Chemistry and ComplexesMagnetism in coordination complexes

Determination of Peptide Backbone Torsion Angles Using Double-Quantum Dipolar Recoupling Solid-State NMR Spectroscopy

Manish Mehta、Matthew T. Eddy、Seth A. McNeill 等 5 位作者2008-01-26Journal of the American Chemical Society

Several approaches for utilizing dipolar recoupling solid-state NMR (ssNMR) techniques to determine local structure at high resolution in peptides and proteins have been developed. However, many of these techniques measure only one torsion angle or are accurate for only certain classes of secondary structure. Addition…

Advanced NMR Techniques and ApplicationsSolid-state spectroscopy and crystallographyNMR spectroscopy and applications

Rheology of Aqueous Solutions of Polyglycidol-Based Analogues to Pluronic Block Copolymers

Silvia Halacheva、Stanislav Rangelov、Christo B. Tsvetanov2008-01-26The Journal of Physical Chemistry B

The aqueous solution properties of a series of polyglycidol-poly(propylene oxide)-polyglycidol (PG-PPO-PG) block copolymers were investigated by means of rheology. The copolymers are considered as analogues to the commercially available Pluronic, poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide) (PEO-PPO…

Advanced Polymer Synthesis and CharacterizationPolymer Nanocomposites and PropertiesSurfactants and Colloidal Systems

Technical Challenges Involved in Implementation of VOC Reactivity-Based Control of Ozone

D.J. Luecken、Michelle R. Mebust2008-01-26Environmental Science & Technology

Controlling VOC emissions on the basis of their individual contribution to ozone formation has been subject to extensive discussion and research in past years, and the concept has gained some acceptance in the air pollution community for certain product categories and industrial operations. Despite its potential to de…

Catalytic Processes in Materials ScienceGas Sensing Nanomaterials and SensorsAir Quality Monitoring and Forecasting

Physicochemical Characterization of Bioactive Polyacrylic Acid Organogels as Potential Antimicrobial Implants for the Buccal Cavity

David S. Jones、Brendan C.O. Muldoon、A. David Woolfson 等 5 位作者2008-01-26Biomacromolecules

This study describes the formulation and physicochemical characterization of poly(acrylic acid) (PAA) organogels, designed as bioactive implants for improved treatment of infectious diseases of the oral cavity. Organogels were formulated containing a range of concentrations of PAA (3-10% w/w) and metronidazole (2 or 5…

Hydrogels: synthesis, properties, applicationsAdvanced Drug Delivery SystemsSupramolecular Self-Assembly in Materials

Tetrahedral Tellurate

Saki Konaka、Yoshiki Ozawa、A. Yagasaki2008-01-26Inorganic Chemistry

A tetraethylammonium (TEA) salt of TeO 4 (2-) was synthesized by reacting Te(OH) 6 with tetraethylammonium hydroxide. X-ray structural analysis of (TEA) 2TeO 4.2H 2O confirmed that this new compound consists of discrete TeO 4 (2-) anions of distorted tetrahedral structure together with TEA cations and water molecules…

Crystal Structures and PropertiesThermal and Kinetic AnalysisChemical Thermodynamics and Molecular Structure

Soil CO2 Emissions from Northern Andean Páramo Ecosystems: Effects of Fallow Agriculture

Ana Cabaneiro、Irene Fernández、L. Pérez-Ventura 等 4 位作者2008-01-26Environmental Science & Technology

The effects of fallow agriculture on soil organic matter (SOM) dynamics and CO2 emissions were assessed in the tropical Andean páramo ecosystem. Possible changes during the cultivation-fallow cycle were monitored in four areas of the Quebrada Piñuelas valley (Venezuela). Uncultivated soils and plots at different stage…

Soil Carbon and Nitrogen DynamicsSoil and Unsaturated FlowClay minerals and soil interactions

Mechanism for the Transport of Ammonia within Carbamoyl Phosphate Synthetase Determined by Molecular Dynamics Simulations

Yubo Fan、L. Koren Lund、Lijiang Yang 等 5 位作者2008-01-26Biochemistry

Carbamoyl phosphate synthetase (CPS) is a member of the amidotransferase family of enzymes that uses the hydrolysis of glutamine as a localized source of ammonia for biosynthetic transformations. Molecular dynamics simulations for the transfer of ammonia and ammonium through a tunnel in the small subunit of CPS result…

Enzyme Structure and FunctionAmino Acid Enzymes and MetabolismBiochemical and Molecular Research

Importance of Platinum(II)-Assisted Platinum(IV) Substitution for the Oxidation of Guanosine Derivatives by Platinum(IV) Complexes

Sunhee Choi、Livia Vastag、Yuri C. Larrabee 等 8 位作者2008-01-26Inorganic Chemistry

Guanosine derivatives with a nucleophilic group at the 5' position (G-5') are oxidized by the Pt (IV) complex Pt( d, l)(1,2-(NH 2) 2C 6H 10)Cl 4 ([Pt (IV)(dach)Cl 4]). The overall redox reaction is autocatalytic, consisting of the Pt (II)-catalyzed Pt (IV) substitution and two-electron transfer between Pt (IV) and the…

Metal complexes synthesis and propertiesPorphyrin and Phthalocyanine ChemistryMetal-Catalyzed Oxygenation Mechanisms

Mass Spectrometry Analysis of a Protein Kinase CK2β Subunit Interactome Isolated from Mouse Brain by Affinity Chromatography

Giorgio Arrigoni、Mario A. Pagano、Stefania Sarno 等 6 位作者2008-01-26Journal of Proteome Research

CK2, an acronym derived from the misnomer "casein kinase 2", denotes a ubiquitous and extremely pleiotropic Ser/Thr protein kinase, the holoenzyme of which is composed of two catalytic (alpha and/or alpha') and two noncatalytic beta subunits acting as a docking platform and the multifarious functions of which are stil…

Protein Structure and DynamicsProtein Kinase Regulation and GTPase SignalingEnzyme Structure and Function

Downregulation of Tsx and OmpW and Upregulation of OmpX Are Required for Iron Homeostasis in Escherichia coli

Xiangmin Lin、Lina Wu、Hui Li 等 5 位作者2008-01-26Journal of Proteome Research

Upregulation of outer membrane (OM) proteins was systematically investigated in response to poor iron availability in the host and natural environments, but downregulation of OM proteins was ill-defined in this response. We utilized proteomic methodologies to characterize altered OM proteins in the sarcosine-insoluble…

Protein Structure and DynamicsBacterial Genetics and BiotechnologyEnzyme Structure and Function